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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA399711" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA399711 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25562390 25562390 PRJNA399711_S_NODE_18409_length_283_cov_12.731707_g18267_i0 PRJNA399711 18409 283 12.731707 36.03073081 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 274 5.12e-69   NTclustered gi|2874254027|emb|OY970352.1| 171953 g18267 i0 86.1 97.8480565371025 259 30 89 3 21 273 2368476 2368218 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 27691 274 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
25564429 25564429 PRJNA399711_S_NODE_67689_length_178_cov_4.418440_g67547_i0 PRJNA399711 67689 178 4.41844 7.8648232 Edaphobacter paludis 3035702 Bacteria Bacteria 86.1 1.48e-12   NTclustered gi|2737763816|gb|CP121194.1| 3035702 g67547 i0 80.531 3.2752808988764 113 20 63 2 1 112 2083269 2083158 Edaphobacter paludis strain DSM 109919 chromosome, complete genome blastn 583 86.1 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Edaphobacter Edaphobacter paludis
25699138 25699138 PRJNA399711_S_NODE_30970_length_236_cov_4.728643_g30828_i0 PRJNA399711 30970 236 4.728643 11.15959748 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 63.9 9.78e-6   NTclustered gi|2874253710|emb|OY969475.1| 2283092 g30828 i0 91.304 0.322033898305085 46 4 19 0 28 73 536026 536071 MAG: Pyrinomonadaceae bacterium isolate MFD01916.bin.c.1 genome assembly, chromosome: 1 blastn 76 63.9 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
25970943 25970943 PRJNA399711_S_NODE_19644_length_277_cov_5.129167_g19502_i0 PRJNA399711 19644 277 5.129167 14.20779259 uncultured Acidobacteriaceae bacterium 194844 Bacteria Bacteria 488 1.6399999999999999e-133   NTclustered gi|672229349|emb|HE860842.1| 194844 g19502 i0 100 95.2707581227437 264 0 95 0 1 264 148 411 Uncultured Acidobacteriaceae bacterium partial 16S rRNA gene, clone2B_10 blastn 26390 488 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae   uncultured Acidobacteriaceae bacterium
26108067 26108067 PRJNA399711_S_NODE_44493_length_207_cov_29.417647_g44351_i0 PRJNA399711 44493 207 29.417647 60.89452929 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 272 1.28e-68   NTclustered gi|2874253677|emb|OY969111.1| 171953 g44351 i0 91.5 103.304347826087 200 13 96 4 10 207 716228 716031 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.3 genome assembly, chromosome: 1 blastn 21384 272 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
26109039 26109039 PRJNA399711_S_NODE_70109_length_176_cov_2.899281_g69967_i0 PRJNA399711 70109 176 2.899281 5.10273456 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 272 1.0499999999999998e-68   NTclustered gi|2874253760|emb|OY969701.1| 2283092 g69967 i0 94.915 120.806818181818 177 4 98 5 1 173 3175390 3175565 MAG: Pyrinomonadaceae bacterium isolate MFD04212.bin.c.1 genome assembly, chromosome: 1 blastn 21262 272 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
26109661 26109661 PRJNA399711_S_NODE_88821_length_161_cov_15.540323_g88679_i0 PRJNA399711 88821 161 15.540323 25.01992003 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 244 2.06e-60   NTclustered gi|217038907|gb|EU810998.1| 171953 g88679 i0 99.259 161.739130434783 135 1 84 0 5 139 135 1 Uncultured Acidobacteria bacterium clone 01QCK 23S ribosomal RNA gene, partial sequence blastn 26040 244 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
26244529 26244529 PRJNA399711_S_NODE_51894_length_196_cov_5.540881_g51752_i0 PRJNA399711 51894 196 5.540881 10.86012676 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 265 2e-66   NTclustered gi|2874253931|emb|OY970256.1| 2283092 g51752 i0 91.371 209.397959183673 197 12 99 5 3 196 359311 359505 MAG: Pyrinomonadaceae bacterium isolate MFD09212.bin.c.2 genome assembly, chromosome: 1 blastn 41042 265 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;