RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA399711" and tax_clade = "Sar"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Sar · 18 ✖

bioproject 1

  • PRJNA399711 · 18 ✖

analysis 1

  • blastn · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25562754 25562754 PRJNA399711_S_NODE_25297_length_254_cov_2.156682_g25155_i0 PRJNA399711 25297 254 2.156682 5.47797228 Cryptosporidium ubiquitum 857276 SAR_Eukaryotes SAR_Eukaryotes 174 4.72e-39   NTclustered gi|1624735034|ref|XM_029019898.1| 857276 g25155 i0 86.335 31.748031496063 161 20 63 2 1 160 584 743 Cryptosporidium ubiquitum 60s ribosomal protein L8 L2 (cubi_02887), partial mRNA blastn 8064 174 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium ubiquitum
25565073 25565073 PRJNA399711_S_NODE_86345_length_163_cov_4.357143_g86203_i0 PRJNA399711 86345 163 4.357143 7.10214309 Eimeria tenella 5802 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.014   NTclustered gi|916416461|ref|XM_013374008.1| 5802 g86203 i0 100 0.171779141104294 28 0 17 0 6 33 120 93 Eimeria tenella uncharacterized protein (ETH_00040805), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria tenella
25700390 25700390 PRJNA399711_S_NODE_62194_length_184_cov_2.408163_g62052_i0 PRJNA399711 62194 184 2.408163 4.43101992 Nitzschia traheaformis 1881117 SAR_Eukaryotes SAR_Eukaryotes 279 6.61e-71   NTclustered gi|2199203581|ref|NC_061047.1| 1881117 g62052 i0 94.022 65.6467391304348 184 11 100 0 1 184 41164 41347 Nitzschia traheaformis chloroplast, complete genome blastn 12079 279 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia traheaformis
25761141 25761141 PRJNA399711_S_NODE_91298_length_160_cov_2.512195_g91156_i0 PRJNA399711 91298 160 2.512195 4.019512 Botrydiopsis 44435 SAR_Eukaryotes SAR_Eukaryotes 296 5.55e-76   NTclustered gi|46019696|emb|AJ579339.1| 240384 g91156 i0 100 101.33125 160 0 100 0 1 160 743 584 Botrydiopsis constricta partial 18S rRNA gene blastn 16213 296 1 Eukaryota Sar     Xanthophyceae Mischococcales Botrydiopsidaceae Botrydiopsis Botrydiopsis constricta
25835571 25835571 PRJNA399711_S_NODE_39099_length_217_cov_12.111111_g38957_i0 PRJNA399711 39099 217 12.111111 26.28111087 Eimeria acervulina 5801 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|914998632|ref|XM_013392170.1| 5801 g38957 i0 89.13 0.341013824884793 46 2 21 1 16 61 1545 1503 Eimeria acervulina glycosylphosphatidylinositol anchor attachment 1 protein, putative partial mRNA blastn 74 54.7 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
25837171 25837171 PRJNA399711_S_NODE_82963_length_166_cov_1.519380_g82821_i0 PRJNA399711 82963 166 1.51938 2.5221708 Plasmodium relictum 85471 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.014   NTclustered gi|1620148298|ref|XM_028678236.1| 85471 g82821 i0 100 0.168674698795181 28 0 17 0 137 164 7869 7842 Plasmodium relictum conserved Plasmodium membrane protein, unknown function (PRELSG_1243100), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium relictum
25896803 25896803 PRJNA399711_S_NODE_77787_length_169_cov_12.500000_g77645_i0 PRJNA399711 77787 169 12.5 21.125 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 302 1.27e-77   NTclustered gi|1802599797|gb|MT001206.1| 41631 g77645 i0 98.817 99.1538461538462 169 2 100 0 1 169 680 512 Colpoda sp. strain HFCC1227 small subunit ribosomal RNA gene, partial sequence blastn 16757 302 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
25896829 25896829 PRJNA399711_S_NODE_83227_length_165_cov_10.695312_g83085_i0 PRJNA399711 83227 165 10.695312 17.6472648 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 303 3.45e-78   NTclustered gi|1802599796|gb|MT001205.1| 41631 g83085 i0 100 100.139393939394 164 0 99 0 1 164 129 292 Colpoda sp. strain HFCC864 small subunit ribosomal RNA gene, partial sequence blastn 16523 303 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
25971300 25971300 PRJNA399711_S_NODE_27116_length_247_cov_9.128571_g26974_i0 PRJNA399711 27116 247 9.128571 22.54757037 Colpoda sp. 41631 SAR_Eukaryotes SAR_Eukaryotes 401 1.9199999999999992e-107   NTclustered gi|2651357791|gb|PP174306.1| 41631 g26974 i0 96.694 97.7044534412955 242 7 98 1 6 247 3693 3453 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24133 401 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
25971930 25971930 PRJNA399711_S_NODE_40812_length_214_cov_4.774011_g40670_i0 PRJNA399711 40812 214 4.774011 10.21638354 Tetrahymena pyriformis 5908 SAR_Eukaryotes SAR_Eukaryotes 209 1.06e-49   NTclustered gi|11466252|ref|NC_000862.1| 5908 g40670 i0 85.507 73.1168224299065 207 23 95 6 11 213 1149 946 Tetrahymena pyriformis mitochondrion, complete genome blastn 15647 209 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
25973577 25973577 PRJNA399711_S_NODE_87972_length_162_cov_3.432000_g87830_i0 PRJNA399711 87972 162 3.432 5.55984 Cystoisospora suis 483139 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.013   NTclustered gi|2795622194|ref|XM_068065127.1| 483139 g87830 i0 96.875 0.197530864197531 32 0 19 1 129 159 398 367 Cystoisospora suis uncharacterized protein (CSUI_004946), partial mRNA blastn 32 52.8 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Cystoisospora Cystoisospora suis
26169068 26169068 PRJNA399711_S_NODE_37997_length_219_cov_49.384615_g37855_i0 PRJNA399711 37997 219 49.384615 108.15230685 root 1 Root_unresolved Root_unresolved 270 4.91e-68   NTclustered gi|2666680359|ref|NC_085297.1| 116065 g37855 i0 90.686 183.03196347032 204 17 92 1 1 202 42089 42292 Choristocarpus tenellus plastid, complete genome blastn 40084 270 1 Eukaryota Sar     Phaeophyceae Sphacelariales Choristocarpaceae Choristocarpus Choristocarpus tenellus
26244736 26244736 PRJNA399711_S_NODE_57214_length_189_cov_8.815789_g57072_i0 PRJNA399711 57214 189 8.815789 16.66184121 Sticholonche zanclea 1054997 SAR_Eukaryotes SAR_Eukaryotes 71.3 4.48e-8   NTclustered gi|1133508201|emb|LT673670.1| 1054997 g57072 i0 97.561 0.216931216931217 41 1 22 0 138 178 443 403 Sticholonche zanclea partial mRNA for Ribosomal Protein L11 (rpl11 gene), isolate AKK-51 2016 blastn 41 71.3 1 Eukaryota Sar       Sticholonchida Sticholonchidae Sticholonche Sticholonche zanclea
26244917 26244917 PRJNA399711_S_NODE_62430_length_184_cov_1.265306_g62288_i0 PRJNA399711 62430 184 1.265306 2.32816304 Hyaloperonospora parasitica 123356 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|170285697|emb|CU672270.3| 123356 g62288 i0 100 0.157608695652174 29 0 16 0 55 83 1789 1761 H.parasitica DNA sequence from clone HpEmoy2-20J10, complete sequence blastn 29 54.7 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
26245267 26245267 PRJNA399711_S_NODE_71238_length_175_cov_2.710145_g71096_i0 PRJNA399711 71238 175 2.710145 4.74275375 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.004   NTclustered gi|669159437|ref|XM_008617059.1| 1156394 g71096 i0 100 0.325714285714286 29 0 17 0 1 29 519 547 Saprolegnia diclina VS20 hypothetical protein mRNA blastn 57 54.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
26378667 26378667 PRJNA399711_S_NODE_15391_length_301_cov_3.753788_g15249_i0 PRJNA399711 15391 301 3.753788 11.29890188 Chrysoparadoxa australica 2498842 SAR_Eukaryotes SAR_Eukaryotes 128 4.52e-25   NTclustered gi|1546603083|gb|MK189074.1| 2498842 g15249 i0 92.308 62.4750830564784 91 5 30 2 112 202 1325 1413 Chrysoparadoxa australica cytochrome c oxidase subunit I mRNA, complete cds; mitochondrial blastn 18805 128 1 Eukaryota Sar           Chrysoparadoxa Chrysoparadoxa australica
26515018 26515018 PRJNA399711_S_NODE_16264_length_295_cov_15.837209_g16122_i0 PRJNA399711 16264 295 15.837209 46.71976655 Eimeria acervulina 5801 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.002   NTclustered gi|915011600|ref|XM_013396010.1| 5801 g16122 i0 100 0.674576271186441 30 0 10 0 87 116 661 632 Eimeria acervulina hypothetical protein, conserved partial mRNA blastn 199 56.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria acervulina
26576787 26576787 PRJNA399711_S_NODE_21080_length_270_cov_10.240343_g20938_i0 PRJNA399711 21080 270 10.240343 27.6489261 root 1 Root_unresolved Root_unresolved 451 2.09e-122   NTclustered gi|613433395|gb|KJ410683.1| 145522 g20938 i0 98.069 167.32962962963 259 5 96 0 12 270 65263 65005 Nannochloropsis oceanica strain LAMB0001 chloroplast, partial genome blastn 45179 451 1 Eukaryota Sar     Eustigmatophyceae Eustigmatales Monodopsidaceae Nannochloropsis Nannochloropsis oceanica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;