RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA399711" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA399711 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25565182 25565182 PRJNA399711_S_NODE_89929_length_161_cov_1.967742_g89787_i0 PRJNA399711 89929 161 1.967742 3.16806462 Seculamonas ecuadoriensis 221724 Root_unresolved Root_unresolved 75 2.85e-9   NTclustered gi|501673477|ref|NC_021128.1| 221724 g89787 i0 94 1.46583850931677 50 2 30 1 111 159 21158 21207 Seculamonas ecuadoriensis strain ATCC 50688 mitochondrion, complete genome blastn 236 75 1 Eukaryota Discoba       Jakobida   Seculamonas Seculamonas ecuadoriensis
25699462 25699462 PRJNA399711_S_NODE_38594_length_218_cov_10.558011_g38452_i0 PRJNA399711 38594 218 10.558011 23.01646398 Colacium vesiculosum 102910 Euglenozoa other_Eukaryota 121 5.209999999999999e-23   NTclustered gi|480512001|gb|JN674636.2| 102910 g38452 i0 89.583 0.981651376146789 96 9 44 1 100 194 74792 74887 Colacium vesiculosum chloroplast, partial genome blastn 214 121 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Colacium Colacium vesiculosum
26108828 26108828 PRJNA399711_S_NODE_64629_length_181_cov_4.840278_g64487_i0 PRJNA399711 64629 181 4.840278 8.76090318 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 56.5 0.001   NTclustered gi|290991054|ref|XM_002678105.1| 5762 g64487 i0 100 0.165745856353591 30 0 17 0 141 170 390 361 Naegleria gruberi nucleoside diphosphate kinase (NAEGRDRAFT_60551), partial mRNA blastn 30 56.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;