contig_metadata
4 rows where analysis = "blastn", bioproject = "PRJNA399711" and tax_clade = "Bacteria candidate phyla"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25837330 | 25837330 | PRJNA399711_S_NODE_87707_length_162_cov_4.992000_g87565_i0 | PRJNA399711 | 87707 | 162 | 4.992 | 8.08704 | Candidatus Altimarinota bacterium | 2044595 | Bacteria | Bacteria | 54.7 | 0.004 | NTclustered | gi|2621785413|emb|OY781871.1| | 2044595 | g87565 | i0 | 100 | 0.351851851851852 | 29 | 0 | 18 | 0 | 39 | 67 | 246146 | 246174 | MAG: Candidatus Gracilibacteria bacterium isolate aa87c5ac-7a06-4bd6-af26-82c4354fe085 genome assembly, chromosome: 1 | blastn | 57 | 54.7 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Altimarinota | Candidatus Altimarinota bacterium | ||||||
| 25973109 | 25973109 | PRJNA399711_S_NODE_73868_length_173_cov_1.551471_g73726_i0 | PRJNA399711 | 73868 | 173 | 1.551471 | 2.68404483 | Candidatus Mycosynbacter amalyticus | 2665156 | Bacteria | Bacteria | 209 | 8.15e-50 | NTclustered | gi|1799615131|gb|CP045921.1| | 2665156 | g73726 | i0 | 88.889 | 107.50289017341 | 171 | 17 | 99 | 2 | 1 | 171 | 219941 | 220109 | Candidatus Mycosynbacter amalyticus isolate JR1 chromosome, complete genome | blastn | 18598 | 209 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Saccharimonadota | Candidatus Mycosynbacter | Candidatus Mycosynbacter amalyticus | |||||
| 26106176 | 26106176 | PRJNA399711_S_NODE_100557_length_154_cov_18.094017_g100415_i0 | PRJNA399711 | 100557 | 154 | 18.094017 | 27.86478618 | Candidatus Saccharimonas sp. | 1917697 | Bacteria | Bacteria | 241 | 2.51e-59 | NTclustered | gi|2070586293|gb|CP076101.2| | 1917697 | g100415 | i0 | 94.805 | 3 | 154 | 8 | 100 | 0 | 1 | 154 | 204948 | 205101 | MAG: Candidatus Saccharimonas sp. isolate JCVI_32_bin.49 chromosome, complete genome | blastn | 462 | 241 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Saccharimonadota | Candidatus Saccharimonadia | Candidatus Saccharimonadales | Candidatus Saccharimonadaceae | Candidatus Saccharimonas | Candidatus Saccharimonas sp. | ||
| 26243973 | 26243973 | PRJNA399711_S_NODE_38422_length_219_cov_2.351648_g38280_i0 | PRJNA399711 | 38422 | 219 | 2.351648 | 5.15010912 | Candidatus Saccharimonas sp. | 1917697 | Bacteria | Bacteria | 294 | 2.92e-75 | NTclustered | gi|2070586293|gb|CP076101.2| | 1917697 | g38280 | i0 | 91.204 | 0.986301369863014 | 216 | 19 | 99 | 0 | 1 | 216 | 54519 | 54304 | MAG: Candidatus Saccharimonas sp. isolate JCVI_32_bin.49 chromosome, complete genome | blastn | 216 | 294 | 1 | Bacteria | Bacteria candidate phyla | Candidatus Saccharimonadota | Candidatus Saccharimonadia | Candidatus Saccharimonadales | Candidatus Saccharimonadaceae | Candidatus Saccharimonas | Candidatus Saccharimonas sp. |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;