RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA399711" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA399711 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25564103 25564103 PRJNA399711_S_NODE_59361_length_187_cov_3.213333_g59219_i0 PRJNA399711 59361 187 3.213333 6.00893271 Entamoeba invadens IP1 370355 Evosea other_Eukaryota 62.1 2.66e-5   NTclustered gi|471188650|ref|XM_004184026.1| 370355 g59219 i0 100 0.176470588235294 33 0 18 0 1 33 391 423 Entamoeba invadens IP1 40S ribosomal protein S11, putative (EIN_174030) mRNA, complete cds blastn 33 62.1 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba invadens
26245654 26245654 PRJNA399711_S_NODE_82750_length_166_cov_2.217054_g82608_i0 PRJNA399711 82750 166 2.217054 3.68030964 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 156 1.03e-33   NTclustered gi|831780400|ref|XM_012900568.1| 1410327 g82608 i0 93.333 65.3795180722892 105 7 63 0 44 148 804 700 Acytostelium subglobosum LB1 hypothetical protein partial mRNA blastn 10853 156 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;