RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA399133" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA399133 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5516956 5516956 PRJNA399133_P_NODE_2265_length_330_cov_3.447458_g2177_i0 PRJNA399133 2265 330 3.447458 11.3766114 Desulfarculaceae bacterium 2528248 Bacteria Bacteria 52.8 0.031   NTclustered gi|2621780225|emb|OY776512.1| 2528248 g2177 i0 100 0.0848484848484849 28 0 8 0 127 154 5698994 5698967 MAG: Desulfarculaceae bacterium isolate e2237022-3439-453f-a1e0-3d3180ebaa11 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfarculia Desulfarculales Desulfarculaceae   Desulfarculaceae bacterium
22089753 22089753 PRJNA399133_P_NODE_5518_length_225_cov_3.194737_g5430_i0 PRJNA399133 5518 225 3.194737 7.18815825 Geomonas paludis 2740185 Bacteria Bacteria 209 1.12e-49   NTclustered gi|2233265061|gb|CP096574.1| 2740185 g5430 i0 86 38.2177777777778 200 23 88 5 2 199 3098798 3098994 Geomonas paludis strain RG22 chromosome, complete genome blastn 8599 209 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geomonas Geomonas paludis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;