RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA399133" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA399133 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
413254 413254 PRJNA399133_P_NODE_7761_length_188_cov_1.830065_g7673_i0 PRJNA399133 7761 188 1.830065 3.4405222 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 303 4.03e-78   NTclustered gi|2874254027|emb|OY970352.1| 171953 g7673 i0 95.767 100.563829787234 189 7 100 1 1 188 2370337 2370525 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.5 genome assembly, chromosome: 1 blastn 18906 303 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
5516895 5516895 PRJNA399133_P_NODE_10765_length_161_cov_1.269841_g10677_i0 PRJNA399133 10765 161 1.269841 2.04444401 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 171 3.54e-38   NTclustered gi|2893358436|emb|OZ220728.1| 2910147 g10677 i0 85.714 31.6459627329193 161 23 100 0 1 161 5374946 5374786 MAG: Vicinamibacterales bacterium isolate 73bbec36-abbb-48ff-8f96-0d8513c84f17 genome assembly, chromosome: 1 blastn 5095 171 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;