RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA399133" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA399133 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6183980 6183980 PRJNA399133_P_NODE_585_length_692_cov_3.520548_g446_i1 PRJNA399133 585 692 3.520548 24.36219216 Fusobacterium 848 Bacteria Bacteria 785 0   NTclustered gi|1370537877|gb|CP028108.1| 860 g446 i1 99.766 466.290462427746 428 1 99 0 265 692 463077 462650 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 322673 791 0.992414664981037 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
8733651 8733651 PRJNA399133_P_NODE_327_length_934_cov_3.747497_g274_i0 PRJNA399133 327 934 3.747497 35.00162198 Fusobacterium 848 Bacteria Bacteria 1703 0   NTclustered gi|1370537877|gb|CP028108.1| 860 g274 i0 99.572 484.295503211991 935 3 100 1 1 934 461587 462521 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 452332 1714 0.993582263710618 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
11284148 11284148 PRJNA399133_P_NODE_509_length_749_cov_3.457983_g446_i0 PRJNA399133 509 749 3.457983 25.90029267 Fusobacterium 848 Bacteria Bacteria 891 0   NTclustered gi|1370537877|gb|CP028108.1| 860 g446 i0 99.794 474.552736982644 485 1 99 0 265 749 463134 462650 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 355440 896 0.994419642857143 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
18264905 18264905 PRJNA399133_P_NODE_5275_length_229_cov_1.726804_g5187_i0 PRJNA399133 5275 229 1.726804 3.95438116 Leptotrichia wadei 157687 Bacteria Bacteria 139 1.52e-28   NTclustered gi|1708575239|dbj|AP019834.1| 157687 g5187 i0 100 2.882096069869 75 0 65 0 1 75 772003 771929 Leptotrichia wadei JMUB3933 DNA, complete genome blastn 660 139 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia wadei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;