RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA399133" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 2 ✖

bioproject 1

  • PRJNA399133 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13834321 13834321 PRJNA399133_P_NODE_2291_length_328_cov_2.740614_g2203_i0 PRJNA399133 2291 328 2.740614 8.98921392 Eukaryota 2759 Plants Plants 601 2.4399999999999998e-167   NTclustered gi|1714003650|gb|MN243923.1| 3079 g2203 i0 99.695 99.9298780487805 328 1 100 0 1 328 484 811 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 32777 601 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.
17658454 17658454 PRJNA399133_P_NODE_7594_length_190_cov_2.270968_g7506_i0 PRJNA399133 7594 190 2.270968 4.3148392 Trebouxiophyceae 75966 Plants Plants 326 8.71e-85   NTclustered gi|723456786|ref|NC_025525.1| 3171 g7506 i0 98.378 129.289473684211 185 3 97 0 6 190 3059 2875 Myrmecia israelensis culture-collection UTEX:1181 chloroplast, complete genome blastn 24565 326 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;