contig_metadata
44 rows where analysis = "blastn", bioproject = "PRJNA397736" and tax_phylum = "Pseudomonadota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1079935 | 1079935 | PRJNA397736_S_NODE_1141_length_266_cov_11.544304_g1105_i0 | PRJNA397736 | 1141 | 266 | 11.544304 | 30.70784864 | Acinetobacter | 469 | Bacteria | Bacteria | 460 | 3.41e-125 | NTclustered | gi|1751391443|gb|CP019143.2| | 28090 | g1105 | i0 | 98.106 | 683.84962406015 | 264 | 5 | 99 | 0 | 1 | 264 | 27240 | 27503 | Acinetobacter lwoffii strain ZS207 chromosome, complete genome | blastn | 181904 | 460 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Moraxellales | Moraxellaceae | Acinetobacter | Acinetobacter lwoffii | ||
| 1079941 | 1079941 | PRJNA397736_S_NODE_901_length_301_cov_9.433824_g865_i0 | PRJNA397736 | 901 | 301 | 9.433824 | 28.39581024 | Neisseria | 482 | Bacteria | Bacteria | 422 | 1.85e-113 | NTclustered | gi|224016091|gb|FJ654670.1| | 493 | g865 | i0 | 92 | 370.983388704319 | 300 | 24 | 99 | 0 | 1 | 300 | 1095 | 1394 | Neisseria canis strain ATCC 14687 23S ribosomal RNA gene, partial sequence | blastn | 111666 | 424 | 0.995283018867924 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Neisseriales | Neisseriaceae | Neisseria | Neisseria canis | ||
| 2355329 | 2355329 | PRJNA397736_S_NODE_1402_length_236_cov_5.429952_g1366_i0 | PRJNA397736 | 1402 | 236 | 5.429952 | 12.81468672 | Neisseria | 482 | Bacteria | Bacteria | 399 | 6.559999999999998e-107 | NTclustered | gi|1540272469|emb|LR134525.1| | 487 | g1366 | i0 | 100 | 329.5 | 216 | 0 | 92 | 0 | 1 | 216 | 1964 | 1749 | Neisseria meningitidis strain NCTC10025 genome assembly, chromosome: 1 | blastn | 77762 | 399 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Neisseriales | Neisseriaceae | Neisseria | Neisseria meningitidis | ||
| 2355330 | 2355330 | PRJNA397736_S_NODE_1842_length_201_cov_10.622093_g1806_i0 | PRJNA397736 | 1842 | 201 | 10.622093 | 21.35040693 | Acinetobacter | 469 | Bacteria | Bacteria | 366 | 5.5e-97 | NTclustered | gi|1751391443|gb|CP019143.2| | 28090 | g1806 | i0 | 99.502 | 664.960199004975 | 201 | 1 | 100 | 0 | 1 | 201 | 28041 | 27841 | Acinetobacter lwoffii strain ZS207 chromosome, complete genome | blastn | 133657 | 366 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Moraxellales | Moraxellaceae | Acinetobacter | Acinetobacter lwoffii | ||
| 2355331 | 2355331 | PRJNA397736_S_NODE_1942_length_195_cov_7.271084_g1906_i0 | PRJNA397736 | 1942 | 195 | 7.271084 | 14.1786138 | Neisseriaceae | 481 | Bacteria | Bacteria | 361 | 2.46e-95 | NTclustered | gi|1633799129|gb|CP039886.1| | 484 | g1906 | i0 | 100 | 369.020512820513 | 195 | 0 | 100 | 0 | 1 | 195 | 126201 | 126007 | Neisseria flavescens strain ATCC 13120 chromosome, complete genome | blastn | 71959 | 361 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Neisseriales | Neisseriaceae | Neisseria | Neisseria flavescens | ||
| 3630700 | 3630700 | PRJNA397736_S_NODE_583_length_381_cov_5.977273_g547_i0 | PRJNA397736 | 583 | 381 | 5.977273 | 22.77341013 | Acinetobacter | 469 | Bacteria | Bacteria | 643 | 4.709999999999998e-180 | NTclustered | gi|2456158263|gb|CP119200.1| | 40214 | g547 | i0 | 97.113 | 648.971128608924 | 381 | 11 | 100 | 0 | 1 | 381 | 167646 | 167266 | Acinetobacter johnsonii strain AJ572 chromosome, complete genome | blastn | 247258 | 649 | 0.99075500770416 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Moraxellales | Moraxellaceae | Acinetobacter | Acinetobacter johnsonii | ||
| 4239198 | 4239198 | PRJNA397736_S_NODE_924_length_297_cov_11.664179_g888_i0 | PRJNA397736 | 924 | 297 | 11.664179 | 34.64261163 | uncultured Pseudomonas sp. | 114707 | Bacteria | Bacteria | 514 | 2.9299999999999996e-141 | NTclustered | gi|582054504|gb|KF851216.1| | 114707 | g888 | i0 | 97.973 | 122.468013468013 | 296 | 6 | 99 | 0 | 2 | 297 | 325 | 30 | Uncultured Pseudomonas sp. clone MZ4P9S19-c36 16S ribosomal RNA gene, partial sequence | blastn | 36373 | 514 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | uncultured Pseudomonas sp. | ||
| 4907906 | 4907906 | PRJNA397736_S_NODE_1384_length_238_cov_6.698565_g1348_i0 | PRJNA397736 | 1384 | 238 | 6.698565 | 15.9425847 | Acinetobacter | 469 | Bacteria | Bacteria | 418 | 1.8299999999999998e-112 | NTclustered | gi|1751391443|gb|CP019143.2| | 28090 | g1348 | i0 | 98.729 | 598.004201680672 | 236 | 2 | 99 | 1 | 3 | 238 | 1489374 | 1489608 | Acinetobacter lwoffii strain ZS207 chromosome, complete genome | blastn | 142325 | 418 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Moraxellales | Moraxellaceae | Acinetobacter | Acinetobacter lwoffii | ||
| 5515845 | 5515845 | PRJNA397736_S_NODE_1805_length_204_cov_50.725714_g1769_i0 | PRJNA397736 | 1805 | 204 | 50.725714 | 103.48045656 | Escherichia coli | 562 | Bacteria | Bacteria | 342 | 9.429999999999999e-90 | NTclustered | gi|2784043131|gb|CP163516.1| | 562 | g1769 | i0 | 100 | 602.333333333333 | 185 | 0 | 91 | 0 | 1 | 185 | 514981 | 514797 | Mutant Escherichia coli isolate FELIX_MS516 chromosome, complete genome | blastn | 122876 | 342 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Escherichia coli | ||
| 6182982 | 6182982 | PRJNA397736_S_NODE_665_length_359_cov_18.342424_g629_i0 | PRJNA397736 | 665 | 359 | 18.342424 | 65.84930216 | Escherichia | 561 | Bacteria | Bacteria | 658 | 0 | NTclustered | gi|2841922414|gb|CP163901.1| | 562 | g629 | i0 | 99.721 | 671.097493036212 | 359 | 1 | 100 | 0 | 1 | 359 | 4602888 | 4603246 | Escherichia coli strain OXEC-129 chromosome, complete genome | blastn | 240924 | 658 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Escherichia coli | ||
| 6182984 | 6182984 | PRJNA397736_S_NODE_885_length_303_cov_87.945255_g849_i0 | PRJNA397736 | 885 | 303 | 87.945255 | 266.47412265 | Enterobacteriaceae | 543 | Bacteria | Bacteria | 521 | 1.7899999999999994e-143 | NTclustered | gi|1932725959|emb|LR882990.1| | 562 | g849 | i0 | 99.649 | 647.917491749175 | 285 | 1 | 94 | 0 | 19 | 303 | 4863167 | 4862883 | Escherichia coli isolate L7_E1373_ETEC genome assembly, chromosome: 1 | blastn | 196319 | 521 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Escherichia coli | ||
| 6789877 | 6789877 | PRJNA397736_S_NODE_206_length_655_cov_5.936102_g188_i0 | PRJNA397736 | 206 | 655 | 5.936102 | 38.8814681 | Vibrio gigantis | 296199 | Bacteria | Bacteria | 56.5 | 0.005 | NTclustered | gi|2800814781|gb|CP090849.1| | 296199 | g188 | i0 | 100 | 0.0458015267175573 | 30 | 0 | 5 | 0 | 133 | 162 | 1691461 | 1691490 | Vibrio gigantis strain YSX12 chromosome 1 | blastn | 30 | 56.5 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Vibrionales | Vibrionaceae | Vibrio | Vibrio gigantis | ||
| 6789879 | 6789879 | PRJNA397736_S_NODE_786_length_325_cov_7.077703_g750_i0 | PRJNA397736 | 786 | 325 | 7.077703 | 23.00253475 | Roseomonas haemaphysalidis | 2768162 | Bacteria | Bacteria | 457 | 5.5399999999999986e-124 | NTclustered | gi|2006285830|gb|CP061177.1| | 2768162 | g750 | i0 | 92.476 | 223.076923076923 | 319 | 24 | 98 | 0 | 1 | 319 | 1135760 | 1135442 | Roseomonas haemaphysalidis strain 546 chromosome, complete genome | blastn | 72500 | 457 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Acetobacterales | Roseomonadaceae | Roseomonas | Roseomonas haemaphysalidis | ||
| 7457834 | 7457834 | PRJNA397736_S_NODE_1826_length_202_cov_72.884393_g1790_i0 | PRJNA397736 | 1826 | 202 | 72.884393 | 147.22647386 | root | 1 | Root_unresolved | Root_unresolved | 374 | 3.3e-99 | NTclustered | gi|2650988455|gb|CP142548.1| | 562 | g1790 | i0 | 100 | 232.039603960396 | 202 | 0 | 100 | 0 | 1 | 202 | 187847 | 188048 | Escherichia coli strain ExPEC_A382 chromosome, complete genome | blastn | 46872 | 374 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Escherichia coli | ||
| 7457838 | 7457838 | PRJNA397736_S_NODE_686_length_353_cov_11.268519_g650_i0 | PRJNA397736 | 686 | 353 | 11.268519 | 39.77787207 | Comamonas | 283 | Bacteria | Bacteria | 496 | 1.28e-135 | NTclustered | gi|507148303|ref|NR_103106.1| | 285 | g650 | i0 | 92.264 | 424.305949008499 | 349 | 27 | 99 | 0 | 3 | 351 | 1393 | 1045 | Comamonas testosteroni strain CNB-1 23S ribosomal RNA gene, complete sequence | blastn | 149780 | 496 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Comamonas | Comamonas testosteroni | ||
| 8065468 | 8065468 | PRJNA397736_S_NODE_667_length_359_cov_8.715152_g631_i0 | PRJNA397736 | 667 | 359 | 8.715152 | 31.28739568 | Actinobacillus genomosp. 2 | 230709 | Bacteria | Bacteria | 54.7 | 0.009 | NTclustered | gi|2489107107|gb|CP103807.1| | 230709 | g631 | i0 | 96.97 | 0.0919220055710306 | 33 | 0 | 9 | 1 | 293 | 325 | 1524494 | 1524463 | Actinobacillus genomosp. 2 strain CCUG15571 chromosome, complete genome | blastn | 33 | 54.7 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pasteurellales | Pasteurellaceae | Actinobacillus | Actinobacillus genomosp. 2 | ||
| 10007995 | 10007995 | PRJNA397736_S_NODE_1828_length_202_cov_11.583815_g1792_i0 | PRJNA397736 | 1828 | 202 | 11.583815 | 23.3993063 | root | 1 | Root_unresolved | Root_unresolved | 368 | 1.54e-97 | NTclustered | gi|1403366562|emb|LS483372.1| | 294 | g1792 | i0 | 99.505 | 545.995049504951 | 202 | 1 | 100 | 0 | 1 | 202 | 9470 | 9269 | Pseudomonas fluorescens strain NCTC10038 genome assembly, chromosome: 1 | blastn | 110291 | 368 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Pseudomonas fluorescens | ||
| 10008000 | 10008000 | PRJNA397736_S_NODE_828_length_316_cov_10.536585_g792_i0 | PRJNA397736 | 828 | 316 | 10.536585 | 33.2956086 | Pseudomonas | 286 | Bacteria | Bacteria | 562 | 1.11e-155 | NTclustered | gi|2752422874|gb|CP159260.1| | 200451 | g792 | i0 | 98.734 | 540.493670886076 | 316 | 4 | 100 | 0 | 1 | 316 | 2003 | 1688 | Pseudomonas poae strain MYb114 chromosome, complete genome | blastn | 170796 | 562 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Pseudomonas poae | ||
| 11890940 | 11890940 | PRJNA397736_S_NODE_2510_length_167_cov_19.398551_g2474_i0 | PRJNA397736 | 2510 | 167 | 19.398551 | 32.39558017 | Pseudomonadales bacterium | 1891229 | Bacteria | Bacteria | 237 | 3.599999999999999e-58 | NTclustered | gi|2621701414|emb|OY760134.1| | 1891229 | g2474 | i0 | 92.262 | 384.041916167665 | 168 | 11 | 100 | 2 | 1 | 167 | 767113 | 766947 | MAG: Pseudomonadales bacterium isolate 08bb8d57-fb42-44ec-b71f-229e3d1812ab genome assembly, chromosome: 1 | blastn | 64135 | 237 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadales bacterium | ||||
| 11890941 | 11890941 | PRJNA397736_S_NODE_2550_length_166_cov_2.474453_g2514_i0 | PRJNA397736 | 2550 | 166 | 2.474453 | 4.10759198 | uncultured Rhodobacteraceae bacterium | 157276 | Bacteria | Bacteria | 285 | 1.26e-72 | NTclustered | gi|443300491|gb|KC216522.1| | 157276 | g2514 | i0 | 97.59 | 88.5481927710843 | 166 | 4 | 100 | 0 | 1 | 166 | 199 | 34 | Uncultured Rhodobacteraceae bacterium clone DBS-240 16S ribosomal RNA gene, partial sequence | blastn | 14699 | 285 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Rhodobacterales | Paracoccaceae | uncultured Rhodobacteraceae bacterium | |||
| 11890942 | 11890942 | PRJNA397736_S_NODE_470_length_429_cov_8.957500_g435_i0 | PRJNA397736 | 470 | 429 | 8.9575 | 38.427675 | Roseomonas fluvialis | 1750527 | Bacteria | Bacteria | 575 | 1.9899999999999994e-159 | NTclustered | gi|2207122373|dbj|AP025637.1| | 1750527 | g435 | i0 | 90.993 | 362.736596736597 | 433 | 30 | 100 | 9 | 1 | 429 | 1172853 | 1173280 | Roseomonas sp. S08 DNA, complete genome | blastn | 155614 | 575 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Acetobacterales | Roseomonadaceae | Roseomonas | Roseomonas fluvialis | ||
| 12558632 | 12558632 | PRJNA397736_S_NODE_1070_length_276_cov_34.821862_g1034_i0 | PRJNA397736 | 1070 | 276 | 34.821862 | 96.10833912 | Enterobacteriaceae | 543 | Bacteria | Bacteria | 484 | 2.11e-132 | NTclustered | gi|2205047080|gb|CP091691.1| | 562 | g1034 | i0 | 98.54 | 674.123188405797 | 274 | 4 | 99 | 0 | 1 | 274 | 3304360 | 3304087 | Escherichia coli strain KMi006 chromosome, complete genome | blastn | 186058 | 484 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Escherichia coli | ||
| 12558634 | 12558634 | PRJNA397736_S_NODE_3010_length_151_cov_29.122951_g2974_i0 | PRJNA397736 | 3010 | 151 | 29.122951 | 43.97565601 | Gammaproteobacteria | 1236 | Bacteria | Bacteria | 268 | 1.12e-67 | NTclustered | gi|699360853|gb|KM241864.1| | 552 | g2974 | i0 | 99.324 | 503.82119205298 | 148 | 1 | 98 | 0 | 1 | 148 | 1347 | 1494 | Erwinia amylovora strain EA030/09 16S ribosomal RNA gene, partial sequence | blastn | 76077 | 270 | 0.992592592592593 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Erwiniaceae | Erwinia | Erwinia amylovora | ||
| 12558635 | 12558635 | PRJNA397736_S_NODE_450_length_440_cov_14.525547_g415_i0 | PRJNA397736 | 450 | 440 | 14.525547 | 63.9124068 | Enterobacteriaceae | 543 | Bacteria | Bacteria | 651 | 0 | NTclustered | gi|817573384|gb|CP011320.1| | 562 | g415 | i0 | 93.454 | 694.397727272727 | 443 | 22 | 99 | 5 | 1 | 439 | 227245 | 226806 | Escherichia coli strain SQ37, complete genome | blastn | 305535 | 651 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Escherichia coli | ||
| 13165889 | 13165889 | PRJNA397736_S_NODE_1231_length_254_cov_4.777778_g1195_i0 | PRJNA397736 | 1231 | 254 | 4.777778 | 12.13555612 | uncultured beta proteobacterium | 86027 | Bacteria | Bacteria | 398 | 2.5699999999999995e-106 | NTclustered | gi|298393732|gb|HM108426.1| | 86027 | g1195 | i0 | 94.882 | 165.015748031496 | 254 | 13 | 100 | 0 | 1 | 254 | 257 | 4 | Uncultured beta proteobacterium clone SHAI071 16S ribosomal RNA gene, partial sequence | blastn | 41914 | 398 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | uncultured beta proteobacterium | |||||
| 13833403 | 13833403 | PRJNA397736_S_NODE_2151_length_184_cov_14.529032_g2115_i0 | PRJNA397736 | 2151 | 184 | 14.529032 | 26.73341888 | Gammaproteobacteria | 1236 | Bacteria | Bacteria | 302 | 1.41e-77 | NTclustered | gi|2890447952|gb|CP177213.1| | 562 | g2115 | i0 | 99.398 | 685.315217391304 | 166 | 1 | 90 | 0 | 1 | 166 | 4208548 | 4208383 | Escherichia coli strain ECGI0223 chromosome, complete genome | blastn | 126098 | 302 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Escherichia coli | ||
| 13833405 | 13833405 | PRJNA397736_S_NODE_611_length_372_cov_18.256560_g575_i0 | PRJNA397736 | 611 | 372 | 18.25656 | 67.9144032 | root | 1 | Root_unresolved | Root_unresolved | 630 | 3.569999999999999e-176 | NTclustered | gi|1920798037|gb|CP063233.1| | 294 | g575 | i0 | 98.867 | 475.965053763441 | 353 | 4 | 95 | 0 | 19 | 371 | 391145 | 391497 | Pseudomonas fluorescens strain KF1 chromosome, complete genome | blastn | 177059 | 636 | 0.990566037735849 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Pseudomonas fluorescens | ||
| 15107649 | 15107649 | PRJNA397736_S_NODE_1372_length_239_cov_10.604762_g1336_i0 | PRJNA397736 | 1372 | 239 | 10.604762 | 25.34538118 | Escherichia | 561 | Bacteria | Bacteria | 315 | 2.48e-81 | NTclustered | gi|1279144376|gb|CP024815.1| | 562 | g1336 | i0 | 90.678 | 671.652719665272 | 236 | 22 | 100 | 0 | 1 | 236 | 4608372 | 4608607 | Escherichia coli strain CREC-629 chromosome, complete genome | blastn | 160525 | 315 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Escherichia coli | ||
| 15107652 | 15107652 | PRJNA397736_S_NODE_2332_length_176_cov_6.346939_g2296_i0 | PRJNA397736 | 2332 | 176 | 6.346939 | 11.17061264 | Haemophilus | 724 | Bacteria | Bacteria | 326 | 7.92e-85 | NTclustered | gi|1919219530|gb|CP063122.1| | 729 | g2296 | i0 | 100 | 583.0625 | 176 | 0 | 100 | 0 | 1 | 176 | 428027 | 428202 | Haemophilus parainfluenzae strain M1C125_4 chromosome, complete genome | blastn | 102619 | 326 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pasteurellales | Pasteurellaceae | Haemophilus | Haemophilus parainfluenzae | ||
| 15107653 | 15107653 | PRJNA397736_S_NODE_352_length_504_cov_15.837895_g319_i0 | PRJNA397736 | 352 | 504 | 15.837895 | 79.8229908 | root | 1 | Root_unresolved | Root_unresolved | 863 | 0 | NTclustered | gi|1403366562|emb|LS483372.1| | 294 | g319 | i0 | 97.988 | 515.781746031746 | 497 | 10 | 99 | 0 | 3 | 499 | 128820 | 128324 | Pseudomonas fluorescens strain NCTC10038 genome assembly, chromosome: 1 | blastn | 259954 | 863 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Pseudomonas fluorescens | ||
| 16382341 | 16382341 | PRJNA397736_S_NODE_1673_length_214_cov_4.183784_g1637_i0 | PRJNA397736 | 1673 | 214 | 4.183784 | 8.95329776 | Lautropia | 47670 | Bacteria | Bacteria | 368 | 1.65e-97 | NTclustered | gi|2694691658|gb|CP146356.1| | 47671 | g1637 | i0 | 97.664 | 217.897196261682 | 214 | 5 | 100 | 0 | 1 | 214 | 1407501 | 1407288 | Lautropia mirabilis strain 512852 chromosome, complete genome | blastn | 46630 | 368 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Burkholderiales | Burkholderiaceae | Lautropia | Lautropia mirabilis | ||
| 16382342 | 16382342 | PRJNA397736_S_NODE_1693_length_212_cov_7.896175_g1657_i0 | PRJNA397736 | 1693 | 212 | 7.896175 | 16.739891 | root | 1 | Root_unresolved | Root_unresolved | 392 | 9.67e-105 | NTclustered | gi|2063549168|gb|MZ503452.1| | 472 | g1657 | i0 | 100 | 118 | 212 | 0 | 100 | 0 | 1 | 212 | 319 | 530 | Acinetobacter sp. strain Ac1 16S ribosomal RNA gene, partial sequence | blastn | 25016 | 392 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Moraxellales | Moraxellaceae | Acinetobacter | Acinetobacter sp. | ||
| 16382345 | 16382345 | PRJNA397736_S_NODE_673_length_357_cov_15.932927_g637_i0 | PRJNA397736 | 673 | 357 | 15.932927 | 56.88054939 | Pseudomonas | 286 | Bacteria | Bacteria | 630 | 3.4099999999999995e-176 | NTclustered | gi|1403366562|emb|LS483372.1| | 294 | g637 | i0 | 98.596 | 499.257703081232 | 356 | 5 | 99 | 0 | 2 | 357 | 9597 | 9952 | Pseudomonas fluorescens strain NCTC10038 genome assembly, chromosome: 1 | blastn | 178235 | 630 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pseudomonadales | Pseudomonadaceae | Pseudomonas | Pseudomonas fluorescens | ||
| 17657491 | 17657491 | PRJNA397736_S_NODE_1614_length_218_cov_9.460317_g1578_i0 | PRJNA397736 | 1614 | 218 | 9.460317 | 20.62349106 | Moraxellaceae | 468 | Bacteria | Bacteria | 377 | 2.799999999999999e-100 | NTclustered | gi|1985959268|gb|CP069437.1| | 34062 | g1578 | i0 | 98.148 | 483.793577981651 | 216 | 4 | 99 | 0 | 1 | 216 | 1497591 | 1497376 | Moraxella osloensis strain FDAARGOS_1202 chromosome, complete genome | blastn | 105467 | 377 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Moraxellales | Moraxellaceae | Faucicola | Faucicola osloensis | ||
| 19537994 | 19537994 | PRJNA397736_S_NODE_1596_length_219_cov_26.610526_g1560_i0 | PRJNA397736 | 1596 | 219 | 26.610526 | 58.27705194 | Escherichia coli | 562 | Bacteria | Bacteria | 399 | 6.009999999999999e-107 | NTclustered | gi|1802614619|gb|CP041425.1| | 562 | g1560 | i0 | 99.543 | 677 | 219 | 1 | 100 | 0 | 1 | 219 | 1203281 | 1203499 | Escherichia coli strain STEC388 chromosome, complete genome | blastn | 148263 | 399 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Escherichia coli | ||
| 20206099 | 20206099 | PRJNA397736_S_NODE_2616_length_164_cov_2.977778_g2580_i0 | PRJNA397736 | 2616 | 164 | 2.977778 | 4.88355592 | Gammaproteobacteria | 1236 | Bacteria | Bacteria | 302 | 1.23e-77 | NTclustered | gi|2890464394|gb|CP177216.1| | 562 | g2580 | i0 | 100 | 807.884146341463 | 163 | 0 | 99 | 0 | 1 | 163 | 226014 | 226176 | Escherichia coli strain ECDA0423 chromosome, complete genome | blastn | 132493 | 302 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Escherichia coli | ||
| 21481605 | 21481605 | PRJNA397736_S_NODE_1417_length_235_cov_5.635922_g1381_i0 | PRJNA397736 | 1417 | 235 | 5.635922 | 13.2444167 | Xylophilus | 54066 | Bacteria | Bacteria | 387 | 5.08e-103 | NTclustered | gi|1799006380|gb|CP047650.1| | 2697032 | g1381 | i0 | 100 | 285.757446808511 | 209 | 0 | 89 | 0 | 27 | 235 | 681622 | 681830 | Xylophilus rhododendri strain KACC 21265 chromosome, complete genome | blastn | 67153 | 387 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Burkholderiales | Xylophilus | Xylophilus rhododendri | |||
| 21481606 | 21481606 | PRJNA397736_S_NODE_2117_length_186_cov_7.312102_g2081_i0 | PRJNA397736 | 2117 | 186 | 7.312102 | 13.60050972 | Haemophilus | 724 | Bacteria | Bacteria | 322 | 1.1e-83 | NTclustered | gi|1919211880|gb|CP063116.1| | 729 | g2081 | i0 | 97.849 | 511.129032258065 | 186 | 4 | 100 | 0 | 1 | 186 | 416224 | 416039 | Haemophilus parainfluenzae strain M1C146_1 chromosome, complete genome | blastn | 95070 | 322 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Pasteurellales | Pasteurellaceae | Haemophilus | Haemophilus parainfluenzae | ||
| 21481607 | 21481607 | PRJNA397736_S_NODE_2357_length_175_cov_8.143836_g2321_i0 | PRJNA397736 | 2357 | 175 | 8.143836 | 14.251713 | Neisseriaceae | 481 | Bacteria | Bacteria | 324 | 2.83e-84 | NTclustered | gi|2102358569|gb|CP083930.1| | 72 | g2321 | i0 | 100 | 381 | 175 | 0 | 100 | 0 | 1 | 175 | 1149655 | 1149481 | Simonsiella muelleri strain DSM 2579 chromosome, complete genome | blastn | 66675 | 324 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Neisseriales | Neisseriaceae | Simonsiella | Simonsiella muelleri | ||
| 24031665 | 24031665 | PRJNA397736_S_NODE_1179_length_261_cov_44.375000_g1143_i0 | PRJNA397736 | 1179 | 261 | 44.375 | 115.81875 | Enterobacteriaceae | 543 | Bacteria | Bacteria | 433 | 7.27e-117 | NTclustered | gi|2505922272|gb|CP124990.1| | 562 | g1143 | i0 | 96.552 | 733.567049808429 | 261 | 9 | 100 | 0 | 1 | 261 | 2426436 | 2426176 | Escherichia coli strain KSE-C14 chromosome, complete genome | blastn | 191461 | 433 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Gammaproteobacteria | Enterobacterales | Enterobacteriaceae | Escherichia | Escherichia coli | ||
| 24031667 | 24031667 | PRJNA397736_S_NODE_1899_length_198_cov_4.005917_g1863_i0 | PRJNA397736 | 1899 | 198 | 4.005917 | 7.93171566 | Comamonadaceae | 80864 | Bacteria | Bacteria | 327 | 2.55e-85 | NTclustered | gi|1752751013|gb|CP044131.1| | 285 | g1863 | i0 | 96.465 | 378.318181818182 | 198 | 7 | 100 | 0 | 1 | 198 | 411004 | 411201 | Comamonas testosteroni strain NFYY023 chromosome, complete genome | blastn | 74907 | 327 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Burkholderiales | Comamonadaceae | Comamonas | Comamonas testosteroni | ||
| 24031672 | 24031672 | PRJNA397736_S_NODE_799_length_322_cov_6.150171_g763_i0 | PRJNA397736 | 799 | 322 | 6.150171 | 19.80355062 | Neisseriaceae | 481 | Bacteria | Bacteria | 516 | 8.92e-142 | NTclustered | gi|1633799129|gb|CP039886.1| | 484 | g763 | i0 | 96.497 | 356.913043478261 | 314 | 7 | 97 | 3 | 1 | 312 | 126525 | 126836 | Neisseria flavescens strain ATCC 13120 chromosome, complete genome | blastn | 114926 | 516 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Betaproteobacteria | Neisseriales | Neisseriaceae | Neisseria | Neisseria flavescens | ||
| 24638534 | 24638534 | PRJNA397736_S_NODE_660_length_360_cov_9.066465_g624_i0 | PRJNA397736 | 660 | 360 | 9.0664650000000009 | 32.639274 | Sediminicoccus rosea | 1225128 | Bacteria | Bacteria | 508 | 1.68e-139 | NTclustered | gi|2619757590|gb|CP137852.1| | 1225128 | g624 | i0 | 93.143 | 254.005555555556 | 350 | 19 | 96 | 5 | 14 | 360 | 737898 | 737551 | Sediminicoccus rosea strain R-30 chromosome, complete genome | blastn | 91442 | 508 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Acetobacterales | Roseomonadaceae | Sediminicoccus | Sediminicoccus rosea | ||
| 25306062 | 25306062 | PRJNA397736_S_NODE_1300_length_246_cov_2.617512_g1264_i0 | PRJNA397736 | 1300 | 246 | 2.617512 | 6.43907952 | Sphingomonas | 13687 | Bacteria | Bacteria | 388 | 1.49e-103 | NTclustered | gi|2279330705|gb|CP101740.1| | 2918765 | g1264 | i0 | 95.122 | 145.215447154472 | 246 | 12 | 100 | 0 | 1 | 246 | 1173842 | 1173597 | Sphingomonas qomolangmaensis strain S5-59 chromosome, complete genome | blastn | 35723 | 388 | 1 | Bacteria | Pseudomonadati | Pseudomonadota | Alphaproteobacteria | Sphingomonadales | Sphingomonadaceae | Sphingomonas | Sphingomonas qomolangmaensis |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;