RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA397736" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA397736 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4239195 4239195 PRJNA397736_S_NODE_2684_length_162_cov_1.669173_g2648_i0 PRJNA397736 2684 162 1.669173 2.70406026 Sus scrofa 9823 Chordata Chordata 278 2.04e-70   NTclustered gi|165931778|emb|AM932505.1| 9823 g2648 i0 98.113 67.7901234567901 159 3 100 0 1 159 279 437 Sus scrofa centromeric satellite repeat, clone Pg3 blastn 10982 278 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
11890937 11890937 PRJNA397736_S_NODE_1330_length_243_cov_5.934579_g1294_i0 PRJNA397736 1330 243 5.934579 14.42102697 Latimeria chalumnae 7897 Chordata Chordata 54.7 0.006   NTclustered gi|2721749050|ref|XM_005986866.2| 7897 g1294 i0 100 0.119341563786008 29 0 12 0 75 103 2346 2374 PREDICTED: Latimeria chalumnae frizzled-9 (LOC102349865), mRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
14441046 14441046 PRJNA397736_S_NODE_2052_length_189_cov_5.162500_g2016_i0 PRJNA397736 2052 189 5.1625 9.757125 Sus scrofa 9823 Chordata Chordata 263 6.879999999999999e-66   NTclustered gi|2103|emb|X16513.1| 9823 g2016 i0 93.258 41.3333333333333 178 12 100 0 11 188 417 240 Pig gender-neutral repetitive DNA blastn 7812 263 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;