RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA397733" and tax_phylum = "Arthropoda"

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tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA397733 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4239182 4239182 PRJNA397733_S_NODE_12724_length_171_cov_2.014085_g12636_i0 PRJNA397733 12724 171 2.014085 3.44408535 Timema cristinae 61476 Arthropoda Arthropoda 58.4 3.08e-4   NTclustered gi|1947043246|emb|OC446893.1| 61476 g12636 i0 97.059 1.29239766081871 34 1 20 0 120 153 221 254 3_Tce_b3v08 blastn 221 58.4 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Phasmatodea Timematidae Timema Timema cristinae
10616025 10616025 PRJNA397733_S_NODE_1149_length_629_cov_12.186667_g1084_i0 PRJNA397733 1149 629 12.186667 76.65413543 Demodex environmental sample 1856688 Arthropoda Arthropoda 920 0   NTclustered gi|1040064834|gb|KU363928.1| 1856688 g1084 i0 94.5 88.9268680445151 600 28 95 5 26 622 598 1 Demodex environmental sample clone K-7-14-37 28S ribosomal RNA gene, partial sequence blastn 55935 920 1 Eukaryota Opisthokonta Metazoa Arthropoda Arachnida Trombidiformes Demodicidae Demodex Demodex environmental sample
20813736 20813736 PRJNA397733_S_NODE_16757_length_151_cov_2.368852_g16669_i0 PRJNA397733 16757 151 2.368852 3.57696652 Monomorium pharaonis 307658 Arthropoda Arthropoda 56.5 0.001   NTclustered gi|1911066375|ref|XM_036283671.1| 307658 g16669 i0 100 0.794701986754967 30 0 20 0 101 130 3053 3082 PREDICTED: Monomorium pharaonis chondroitin sulfate proteoglycan 4 (LOC105840134), transcript variant X4, mRNA blastn 120 56.5 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hymenoptera Formicidae Monomorium Monomorium pharaonis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;