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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA397065" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA397065 · 18 ✖

analysis 1

  • blastn · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
411983 411983 PRJNA397065_S_NODE_17921_length_163_cov_1.477612_g17671_i0 PRJNA397065 17921 163 1.477612 2.40850756 Mus musculus 10090 Chordata Chordata 285 1.23e-72   NTclustered gi|209552504|gb|FJ209304.1| 10090 g17671 i0 100 16.9877300613497 154 0 94 0 1 154 73 226 Mus musculus MALAT1 mRNA, complete sequence blastn 2769 285 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
1079246 1079246 PRJNA397065_S_NODE_11241_length_236_cov_1.816425_g10991_i0 PRJNA397065 11241 236 1.816425 4.286763 Mus 10088 Chordata Chordata 436 4.999999999999999e-118   NTclustered gi|846387586|dbj|LC061956.1| 10090 g10991 i0 100 100 236 0 100 0 1 236 2405 2640 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_5 blastn 23600 436 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
4907391 4907391 PRJNA397065_S_NODE_15064_length_187_cov_1.468354_g14814_i0 PRJNA397065 15064 187 1.468354 2.74582198 Mus 10088 Chordata Chordata 346 6.56e-91   NTclustered gi|846387457|dbj|LC061936.1| 10090 g14814 i0 100 100 187 0 100 0 1 187 1815 2001 Mus musculus mitochondrion DNA, including ND2, tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, tRNA-Tyr, COX1 genes, complete sequence, sequence_id: (4078..6548)_6 blastn 18700 346 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
6182621 6182621 PRJNA397065_S_NODE_18945_length_156_cov_2.007874_g18695_i0 PRJNA397065 18945 156 2.007874 3.13228344 Mus 10088 Chordata Chordata 289 9e-74   NTclustered gi|846387786|dbj|LC061991.1| 10090 g18695 i0 100 100 156 0 100 0 1 156 737 582 Mus musculus mitochondrion DNA, including ATP6, COX3, tRNA-Gly, ND3, tRNA-Arg, ND4L, ND4 genes, complete sequence, sequence_id: (8070..10988)_18 blastn 15600 289 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
6789766 6789766 PRJNA397065_S_NODE_18686_length_158_cov_1.457364_g18436_i0 PRJNA397065 18686 158 1.457364 2.30263512 Mus musculus 10090 Chordata Chordata 292 7.07e-75   NTclustered gi|1738628607|ref|NM_001374138.1| 10090 g18436 i0 100 82.3860759493671 158 0 100 0 1 158 605 448 Mus musculus lymphocyte antigen 6 family member E (Ly6e), transcript variant 7, mRNA blastn 13017 292 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
7457135 7457135 PRJNA397065_S_NODE_11366_length_234_cov_2.687805_g11116_i0 PRJNA397065 11366 234 2.687805 6.2894637 Mus 10088 Chordata Chordata 433 6.41e-117   NTclustered gi|846387586|dbj|LC061956.1| 10090 g11116 i0 100 100 234 0 100 0 1 234 928 695 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_5 blastn 23400 433 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
7457423 7457423 PRJNA397065_S_NODE_18086_length_162_cov_1.548872_g17836_i0 PRJNA397065 18086 162 1.548872 2.50917264 Mus 10088 Chordata Chordata 300 4.36e-77   NTclustered gi|846387786|dbj|LC061991.1| 10090 g17836 i0 100 100 162 0 100 0 1 162 952 791 Mus musculus mitochondrion DNA, including ATP6, COX3, tRNA-Gly, ND3, tRNA-Arg, ND4L, ND4 genes, complete sequence, sequence_id: (8070..10988)_18 blastn 16200 300 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
8732286 8732286 PRJNA397065_S_NODE_18067_length_162_cov_1.766917_g17817_i0 PRJNA397065 18067 162 1.766917 2.86240554 Mus 10088 Chordata Chordata 300 4.36e-77   NTclustered gi|846387586|dbj|LC061956.1| 10090 g17817 i0 100 100 162 0 100 0 1 162 2047 2208 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_5 blastn 16200 300 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
8732630 8732630 PRJNA397065_S_NODE_8987_length_282_cov_1.830040_g8737_i0 PRJNA397065 8987 282 1.8300399999999999 5.1607128 Mus 10088 Chordata Chordata 521 1.6499999999999996e-143   NTclustered gi|846387676|dbj|LC061971.1| 10090 g8737 i0 100 100 282 0 100 0 1 282 1666 1385 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_20 blastn 28200 521 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
9340177 9340177 PRJNA397065_S_NODE_18988_length_156_cov_1.110236_g18738_i0 PRJNA397065 18988 156 1.110236 1.73196816 Mus musculus 10090 Chordata Chordata 283 4.1899999999999994e-72   NTclustered gi|57866|emb|X52916.1| 10090 g18738 i0 99.359 130.974358974359 156 1 100 0 1 156 1781 1626 M. musculus H-2L(q) gene for H-2L(q) antigen. 3' partial cds blastn 20432 283 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
9340179 9340179 PRJNA397065_S_NODE_19608_length_152_cov_1.528455_g19358_i0 PRJNA397065 19608 152 1.528455 2.3232516 Mus musculus 10090 Chordata Chordata 281 1.46e-71   NTclustered gi|12847186|dbj|AK011211.1| 10090 g19358 i0 100 99.8552631578947 152 0 100 0 1 152 254 405 Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2600014G17 product:ribosomal protein L11, cytosolic homolog [Rattus norvegicus], full insert sequence blastn 15178 281 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
10615982 10615982 PRJNA397065_S_NODE_5769_length_401_cov_10.661290_g5520_i0 PRJNA397065 5769 401 10.66129 42.7517729 Mus musculus 10090 Chordata Chordata 741 0   NTclustered gi|191660|gb|J04181.1|MUSACTMEL 10090 g5520 i0 100 95.9700748129676 401 0 100 0 1 401 1457 1857 Mouse A-X actin mRNA, complete cds blastn 38484 741 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
11282727 11282727 PRJNA397065_S_NODE_18269_length_160_cov_4.183206_g18019_i0 PRJNA397065 18269 160 4.183206 6.6931296 Canidae 9608 Chordata Chordata 279 5.59e-71   NTclustered gi|1953421192|ref|XM_038449860.1| 9615 g18019 i0 100 401.30625 151 0 94 0 10 160 2116 2266 PREDICTED: Canis lupus familiaris RP2 activator of ARL3 GTPase (RP2), transcript variant X1, mRNA blastn 64209 279 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
12558003 12558003 PRJNA397065_S_NODE_13190_length_208_cov_1.402235_g12940_i0 PRJNA397065 13190 208 1.402235 2.9166488 Mus 10088 Chordata Chordata 383 5.69e-102   NTclustered gi|73760559|gb|AC131116.3| 10090 g12940 i0 100 101.269230769231 207 0 99 0 2 208 134688 134894 Mus musculus BAC clone RP24-344M21 from chromosome 7, complete sequence blastn 21064 383 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
20813591 20813591 PRJNA397065_S_NODE_13777_length_200_cov_3.005848_g13527_i0 PRJNA397065 13777 200 3.005848 6.011696 Hyla sarda 327740 Chordata Chordata 56.5 0.001   NTclustered gi|2512160518|ref|XM_056558461.1| 327740 g13527 i0 100 2.85 30 0 15 0 171 200 3978 3949 PREDICTED: Hyla sarda MAX network transcriptional repressor (MNT), transcript variant X2, mRNA blastn 570 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
20813628 20813628 PRJNA397065_S_NODE_17517_length_166_cov_2.372263_g17267_i0 PRJNA397065 17517 166 2.372263 3.93795658 Mus musculus 10090 Chordata Chordata 307 2.69e-79   NTclustered gi|12845852|dbj|AK010422.1| 10090 g17267 i0 100 103.813253012048 166 0 100 0 1 166 385 550 Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410006A12 product:HEMOGLOBIN, BETA ADULT MAJOR CHAIN, full insert sequence blastn 17233 307 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
24030950 24030950 PRJNA397065_S_NODE_10819_length_243_cov_2.780374_g10569_i0 PRJNA397065 10819 243 2.780374 6.75630882 root 1 Root_unresolved Root_unresolved 449 6.65e-122   NTclustered gi|12846704|dbj|AK010927.1| 10090 g10569 i0 100 101.572016460905 243 0 100 0 1 243 332 90 Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched library, clone:2510008C04 product:hemoglobin, beta adult major chain, full insert sequence blastn 24682 449 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
25305575 25305575 PRJNA397065_S_NODE_16000_length_178_cov_2.208054_g15750_i0 PRJNA397065 16000 178 2.208054 3.93033612 Mus 10088 Chordata Chordata 329 6.21e-86   NTclustered gi|846387586|dbj|LC061956.1| 10090 g15750 i0 100 100 178 0 100 0 1 178 2047 1870 Mus musculus mitochondrion DNA, including COX1, tRNA-Ser, tRNA-Asp, COX2, tRNA-Lys, ATP8, ATP6 genes, complete sequence, sequence_id: (5951..8605)_5 blastn 17800 329 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;