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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA397065" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 10 ✖

bioproject 1

  • PRJNA397065 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
411922 411922 PRJNA397065_S_NODE_11761_length_227_cov_140.500000_g11511_i0 PRJNA397065 11761 227 140.5 318.935 Koliella longiseta 33092 Plants Plants 303 5.06e-78   NTclustered gi|371782094|emb|HE610126.1| 33092 g11511 i0 90.789 101.709251101322 228 19 100 2 1 227 5445 5219 Koliella longiseta 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 470-1 blastn 23088 303 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella longiseta
411964 411964 PRJNA397065_S_NODE_16161_length_176_cov_24.190476_g15911_i0 PRJNA397065 16161 176 24.190476 42.57523776 Picochlorum sp. 2812594 Plants Plants 289 1.04e-73   NTclustered gi|2632235342|gb|OR922724.1| 2812594 g15911 i0 97.076 97.4715909090909 171 5 97 0 1 171 3463 3293 Picochlorum sp. strain AGSB0210 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17155 289 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp.
412041 412041 PRJNA397065_S_NODE_4241_length_507_cov_11.476987_g4000_i0 PRJNA397065 4241 507 11.476987 58.18832409 Pseudochlorella signiensis 173497 Plants Plants 763 0   NTclustered gi|725650714|ref|NC_025529.1| 173497 g4000 i0 93.75 172.560157790927 512 27 100 3 1 507 151334 150823 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 87488 763 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
2355256 2355256 PRJNA397065_S_NODE_8702_length_288_cov_16.436293_g8452_i0 PRJNA397065 8702 288 16.436293 47.33652384 Chlorophyta 3041 Plants Plants 329 1.1e-85   NTclustered gi|371782092|emb|HE610124.1| 55999 g8452 i0 87.415 103.090277777778 294 27 100 8 1 288 2449 2738 Stigeoclonium helveticum 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 477-2 blastn 29690 329 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetophorales Chaetophoraceae Stigeoclonium Stigeoclonium helveticum
6182404 6182404 PRJNA397065_S_NODE_13825_length_199_cov_13250.564706_g13575_i0 PRJNA397065 13825 199 13250.564706 26368.62376494 Sphaeropleales 35491 Plants Plants 250 5.71e-62   NTclustered gi|2727922309|gb|PP766946.1| 81818 g13575 i0 98.582 70.8542713567839 141 2 71 0 59 199 3176 3036 Monoraphidium dybowskii strain Ga012 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14100 250 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium dybowskii
8065328 8065328 PRJNA397065_S_NODE_15727_length_180_cov_8.682119_g15477_i0 PRJNA397065 15727 180 8.682119 15.6278142 Hormotilopsis gelatinosa 56008 Plants Plants 287 3.85e-73   NTclustered gi|586587046|gb|KC817003.1| 56008 g15477 i0 95.58 100.683333333333 181 5 100 3 1 180 1770 1592 Hormotilopsis gelatinosa strain UTEX B104 28S ribosomal RNA gene, partial sequence blastn 18123 287 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chaetopeltidales Chaetopeltidaceae Hormotilopsis Hormotilopsis gelatinosa
14440843 14440843 PRJNA397065_S_NODE_10132_length_256_cov_7.096916_g9882_i0 PRJNA397065 10132 256 7.096916 18.16810496 Pseudochlorella signiensis 173497 Plants Plants 368 2.03e-97   NTclustered gi|725650714|ref|NC_025529.1| 173497 g9882 i0 92.913 127.6484375 254 17 99 1 3 256 150297 150045 Pabia signiensis culture-collection SAG:7.90 chloroplast, complete genome blastn 32678 368 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Pseudochlorella Pseudochlorella signiensis
17657042 17657042 PRJNA397065_S_NODE_16674_length_172_cov_8.265734_g16424_i0 PRJNA397065 16674 172 8.265734 14.21706248 Chlorellaceae 35461 Plants Plants 209 8.09e-50   NTclustered gi|698349064|gb|KM462875.1| 163096 g16424 i0 88.506 136.941860465116 174 18 100 1 1 172 56171 56344 Chlorosarcina brevispinosa culture-collection UTEX:1176 chloroplast, partial genome blastn 23554 209 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Pleurastrosarcina Pleurastrosarcina brevispinosa
17657098 17657098 PRJNA397065_S_NODE_17954_length_162_cov_6.609023_g17704_i0 PRJNA397065 17954 162 6.609023 10.70661726 Chlorellaceae 35461 Plants Plants 291 2.62e-74   NTclustered gi|300713443|gb|GQ487247.1| 797667 g17704 i0 99.375 98.9506172839506 160 1 99 0 2 161 599 758 Dictyosphaerium sp. CCALA 333 18S ribosomal RNA gene, partial sequence blastn 16030 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Dictyosphaerium Dictyosphaerium sp. CCALA 333
20205927 20205927 PRJNA397065_S_NODE_6056_length_386_cov_6318.137255_g5807_i0 PRJNA397065 6056 386 6318.137255 24388.0098043 Trebouxiophyceae 75966 Plants Plants 433 1.13e-116   NTclustered gi|1169296931|gb|KY364701.1| 63676 g5807 i0 90.549 31.7564766839378 328 30 85 1 59 386 5779 5453 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 12258 433 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;