RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA397065" and tax_clade = "Sar"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

bioproject 1

  • PRJNA397065 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5515800 5515800 PRJNA397065_S_NODE_7205_length_336_cov_14.371336_g6955_i0 PRJNA397065 7205 336 14.371336 48.28768896 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 311 4.74e-80   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g6955 i0 84.431 43.1339285714286 334 33 98 14 8 336 4022 3703 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 14493 311 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
6789699 6789699 PRJNA397065_S_NODE_10906_length_241_cov_13.500000_g10656_i0 PRJNA397065 10906 241 13.5 32.535 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 315 2.51e-81   NTclustered gi|238617605|gb|FJ973380.1| 45107 g10656 i0 90.417 100.248962655602 240 21 99 2 1 239 1679 1441 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 24160 315 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
13165741 13165741 PRJNA397065_S_NODE_15291_length_184_cov_8.754839_g15041_i0 PRJNA397065 15291 184 8.754839 16.10890376 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 180 6.9e-41   NTclustered gi|238617602|gb|FJ973377.1| 188950 g15041 i0 84.492 18.9673913043478 187 23 100 6 1 184 2719 2902 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 3490 180 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima
14440885 14440885 PRJNA397065_S_NODE_14112_length_196_cov_12655.239521_g13862_i0 PRJNA397065 14112 196 12655.239521 24804.269461160002 Thaumatomastix sp. CC002-Boundary Bay 741090 SAR_Eukaryotes SAR_Eukaryotes 263 7.189999999999999e-66   NTclustered gi|290760490|gb|GQ144693.1| 741090 g13862 i0 99.31 73.9795918367347 145 1 74 0 1 145 2821 2965 Thaumatomastix sp. CC002-Boundary Bay large subunit ribosomal RNA gene, partial sequence blastn 14500 263 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida Thaumatomastigidae Thaumatomastix Thaumatomastix sp. CC002-Boundary Bay
18263719 18263719 PRJNA397065_S_NODE_5355_length_424_cov_10.473418_g5106_i0 PRJNA397065 5355 424 10.473418 44.40729232 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 538 2.569999999999999e-148   NTclustered gi|238617605|gb|FJ973380.1| 45107 g5106 i0 89.647 99.7688679245283 425 41 100 3 1 424 1679 1257 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 42302 538 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
18931209 18931209 PRJNA397065_S_NODE_5595_length_410_cov_5878.643045_g5346_i0 PRJNA397065 5595 410 5878.643045 24102.4364845 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 521 2.5e-143   NTclustered gi|166084089|gb|EF024612.1| 175275 g5346 i0 92.798 88.190243902439 361 24 88 2 52 410 390 30 Cercozoa environmental sample clone Elev_18S_933 18S ribosomal RNA gene, partial sequence blastn 36158 521 1 Eukaryota Sar   Cercozoa         uncultured Cercozoa
19537959 19537959 PRJNA397065_S_NODE_7316_length_332_cov_9.075908_g7066_i0 PRJNA397065 7316 332 9.075908 30.13201456 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 285 2.8299999999999996e-72   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g7066 i0 83.082 42.5481927710843 331 39 98 14 8 332 4022 3703 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 14126 285 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
22088519 22088519 PRJNA397065_S_NODE_17578_length_165_cov_8.610294_g17328_i0 PRJNA397065 17578 165 8.610294 14.2069851 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 97.1 6.28e-16   NTclustered gi|238617602|gb|FJ973377.1| 188950 g17328 i0 98.182 29.3515151515152 55 1 33 0 111 165 2353 2407 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 4843 97.1 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;