RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA397065" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 7 ✖

bioproject 1

  • PRJNA397065 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1079240 1079240 PRJNA397065_S_NODE_11101_length_238_cov_3.038278_g10851_i0 PRJNA397065 11101 238 3.038278 7.23110164 Chryseobacterium 59732 Bacteria Bacteria 388 1.43e-103   NTclustered gi|2429070341|gb|CP115857.1| 373672 g10851 i0 96.581 373.563025210084 234 8 98 0 5 238 1757364 1757131 Chryseobacterium gambrini strain PL22-1A chromosome, complete genome blastn 88908 388 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium gambrini
3630330 3630330 PRJNA397065_S_NODE_19223_length_154_cov_2.336000_g18973_i0 PRJNA397065 19223 154 2.336 3.59744 Weeksellaceae 2762318 Bacteria Bacteria 268 1.15e-67   NTclustered gi|2216362202|gb|CP094529.1| 2929799 g18973 i0 98.052 504.006493506493 154 3 100 0 1 154 224491 224338 Chryseobacterium oryzae strain ADR-1 chromosome, complete genome blastn 77617 268 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Chryseobacterium Chryseobacterium oryzae
6789734 6789734 PRJNA397065_S_NODE_15686_length_181_cov_2.164474_g15436_i0 PRJNA397065 15686 181 2.164474 3.91769794 Mucilaginibacter sp. 1882438 Bacteria Bacteria 329 6.340000000000001e-86   NTclustered gi|2894611780|gb|PV018880.1| 1882438 g15436 i0 99.448 251.591160220994 181 1 100 0 1 181 2599 2419 Mucilaginibacter sp. strain E4BP6_rRNA_1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 45538 329 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter sp.
7457371 7457371 PRJNA397065_S_NODE_16826_length_171_cov_3.591549_g16576_i0 PRJNA397065 16826 171 3.591549 6.14154879 Bacteroidales 171549 Bacteria Bacteria 254 3.66e-63   NTclustered gi|2580284204|gb|OR338521.1| 59823 g16576 i0 93.605 467.760233918129 172 7 99 4 2 171 1020 1189 Prevotella sp. strain k141_12813 hypothetical protein gene, complete cds blastn 79987 255 0.996078431372549 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp.
12558224 12558224 PRJNA397065_S_NODE_1830_length_901_cov_4.998853_g1668_i0 PRJNA397065 1830 901 4.998853 45.03966553 root 1 Root_unresolved Root_unresolved 1663 0   NTclustered gi|2912586557|gb|CP179925.1| 821 g1668 i0 100 15.7247502774695 900 0 99 0 2 901 1672419 1671520 Mutant Phocaeicola vulgatus strain NB1000S, complete genome blastn 14168 1664 0.999399038461538 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus
21481133 21481133 PRJNA397065_S_NODE_16877_length_171_cov_2.190141_g16627_i0 PRJNA397065 16877 171 2.190141 3.74514111 Mucilaginibacter 423349 Bacteria Bacteria 311 2.14e-80   NTclustered gi|1085785005|emb|LT629740.1| 652787 g16627 i0 99.415 428.25730994152 171 1 100 0 1 171 4558686 4558856 Mucilaginibacter mallensis strain MP1X4 genome assembly, chromosome: I blastn 73232 311 1 Bacteria FCB group Pseudomonadati Bacteroidota Sphingobacteriia Sphingobacteriales Sphingobacteriaceae Mucilaginibacter Mucilaginibacter mallensis
24031391 24031391 PRJNA397065_S_NODE_3499_length_585_cov_4.836331_g3267_i0 PRJNA397065 3499 585 4.836331 28.29253635 root 1 Root_unresolved Root_unresolved 1081 0   NTclustered gi|2912586557|gb|CP179925.1| 821 g3267 i0 100 14.8803418803419 585 0 100 0 1 585 1670823 1671407 Mutant Phocaeicola vulgatus strain NB1000S, complete genome blastn 8705 1081 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Bacteroidaceae Phocaeicola Phocaeicola vulgatus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;