RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA396510" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA396510 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16989374 16989374 PRJNA396510_P_NODE_7754_length_213_cov_1.865854_g7685_i0 PRJNA396510 7754 213 1.865854 3.97426902 Anomopus telphusae 338910 Rotifera other_Eukaryota 355 1.28e-93   NTclustered gi|72153748|gb|DQ089741.1| 338910 g7685 i0 96.714 39.5868544600939 213 7 100 0 1 213 2668 2456 Anomopus telphusae 28S ribosomal RNA gene, partial sequence blastn 8432 355 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Anomopus Anomopus telphusae
24638285 24638285 PRJNA396510_P_NODE_1200_length_473_cov_1.799528_g1131_i0 PRJNA396510 1200 473 1.799528 8.51176744 Philodina roseola 96448 Rotifera other_Eukaryota 780 0   NTclustered gi|37785582|gb|AY210469.1| 96448 g1131 i0 96.414 96.3340380549683 474 16 100 1 1 473 817 344 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 45566 780 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;