RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA396510" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA396510 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3629931 3629931 PRJNA396510_P_NODE_13263_length_167_cov_0.864407_g13194_i0 PRJNA396510 13263 167 0.864407 1.44355969 Mesomycoplasma 2923352 Bacteria Bacteria 309 7.53e-80   NTclustered gi|1720621726|gb|CP035041.1| 2100 g13194 i0 100 15.2395209580838 167 0 100 0 1 167 635127 635293 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 2545 309 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
4907151 4907151 PRJNA396510_P_NODE_15924_length_162_cov_0.902655_g15855_i0 PRJNA396510 15924 162 0.902655 1.4623011 Mesomycoplasma 2923352 Bacteria Bacteria 300 4.36e-77   NTclustered gi|1720621726|gb|CP035041.1| 2100 g15855 i0 100 15 162 0 100 0 1 162 401658 401497 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 2430 300 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
21480830 21480830 PRJNA396510_P_NODE_14777_length_164_cov_0.886957_g14708_i0 PRJNA396510 14777 164 0.886957 1.45460948 Mesomycoplasma 2923352 Bacteria Bacteria 303 3.42e-78   NTclustered gi|1720621726|gb|CP035041.1| 2100 g14708 i0 100 15 164 0 100 0 1 164 394886 395049 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 2460 303 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;