RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA396510" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA396510 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1686749 1686749 PRJNA396510_P_NODE_4722_length_263_cov_1.457944_g4653_i0 PRJNA396510 4722 263 1.457944 3.83439272 Bradybaena similaris 145626 Mollusca Mollusca 58.4 5.16e-4   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g4653 i0 97.059 12.9201520912548 34 1 14 0 75 108 22237722 22237689 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 3398 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
2962670 2962670 PRJNA396510_P_NODE_15743_length_162_cov_0.902655_g15674_i0 PRJNA396510 15743 162 0.902655 1.4623011 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.013   NTclustered gi|2912999222|dbj|AP039605.1| 145626 g15674 i0 100 0.172839506172839 28 0 17 0 126 153 48696825 48696798 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 24, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
3629938 3629938 PRJNA396510_P_NODE_15523_length_163_cov_0.894737_g15454_i0 PRJNA396510 15523 163 0.894737 1.45842131 Metazoa 33208 Mollusca Mollusca 52.8 0.014   NTclustered gi|2427390617|ref|XM_052917999.1| 6604 g15454 i0 100 2.69938650306748 28 0 17 0 14 41 5126 5153 PREDICTED: Mya arenaria protein mono-ADP-ribosyltransferase PARP14-like (LOC128212513), mRNA blastn 440 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria
19537811 19537811 PRJNA396510_P_NODE_4516_length_268_cov_2.328767_g4447_i0 PRJNA396510 4516 268 2.328767 6.24109556 Physella acuta 109671 Mollusca Mollusca 473 4.419999999999999e-129   NTclustered gi|2572452079|ref|XR_009385380.1| 109671 g4447 i0 98.507 4.1455223880597 268 4 100 0 1 268 3721 3454 PREDICTED: Physella acuta large subunit ribosomal RNA (LOC131933988), rRNA blastn 1111 473 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta
20205340 20205340 PRJNA396510_P_NODE_8236_length_207_cov_2.556962_g8167_i0 PRJNA396510 8236 207 2.556962 5.29291134 Metazoa 33208 Mollusca Mollusca 383 5.65e-102   NTclustered gi|2572452079|ref|XR_009385380.1| 109671 g8167 i0 100 39.2898550724638 207 0 100 0 1 207 1745 1539 PREDICTED: Physella acuta large subunit ribosomal RNA (LOC131933988), rRNA blastn 8133 383 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta
25305327 25305327 PRJNA396510_P_NODE_540_length_667_cov_4.233010_g483_i0 PRJNA396510 540 667 4.23301 28.2341767 Metazoa 33208 Mollusca Mollusca 1188 0   NTclustered gi|2572452079|ref|XR_009385380.1| 109671 g483 i0 98.801 42.9115442278861 667 8 100 0 1 667 1921 2587 PREDICTED: Physella acuta large subunit ribosomal RNA (LOC131933988), rRNA blastn 28622 1188 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Physidae Physella Physella acuta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;