RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

17 rows where analysis = "blastn", bioproject = "PRJNA396510" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA396510 · 17 ✖

analysis 1

  • blastn · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
411887 411887 PRJNA396510_P_NODE_14721_length_164_cov_0.886957_g14652_i0 PRJNA396510 14721 164 0.886957 1.45460948 Sitta europaea 50251 Chordata Chordata 56.5 0.001   NTclustered gi|2917584734|emb|OZ228636.1| 50251 g14652 i0 100 0.365853658536585 30 0 18 0 112 141 14214343 14214314 Sitta europaea genome assembly, chromosome: 15 blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Sittidae Sitta Sitta europaea
411898 411898 PRJNA396510_P_NODE_6721_length_227_cov_0.696629_g6652_i0 PRJNA396510 6721 227 0.696629 1.58134783 Cairina moschata 8855 Chordata Chordata 52.8 0.02   NTclustered gi|2921976028|gb|CP130398.1| 8855 g6652 i0 100 0.123348017621145 28 0 12 0 167 194 9382078 9382051 Cairina moschata breed yongchun chromosome 20 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cairina Cairina moschata
411901 411901 PRJNA396510_P_NODE_8601_length_204_cov_0.896774_g8532_i0 PRJNA396510 8601 204 0.896774 1.82941896 Alligator mississippiensis 8496 Chordata Chordata 158 3.67e-34   NTclustered gi|2580415911|ref|XR_002091054.2| 8496 g8532 i0 81.095 2.3921568627451 201 35 98 3 2 201 10400 10598 PREDICTED: Alligator mississippiensis uncharacterized LOC109283781 (LOC109283781), transcript variant X1, ncRNA blastn 488 158 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
1686747 1686747 PRJNA396510_P_NODE_3382_length_305_cov_2.671875_g3313_i0 PRJNA396510 3382 305 2.671875 8.14921875 Polypterus senegalus 55291 Chordata Chordata 333 9.069999999999998e-87   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g3313 i0 90.514 18.7803278688525 253 23 83 1 7 258 1199 1451 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 5728 333 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
2962666 2962666 PRJNA396510_P_NODE_14663_length_164_cov_0.886957_g14594_i0 PRJNA396510 14663 164 0.886957 1.45460948 Crocodylus palustris 184238 Chordata Chordata 292 7.41e-75   NTclustered gi|312233507|ref|NC_014706.1| 184238 g14594 i0 98.78 72.9756097560976 164 2 100 0 1 164 507 344 Crocodylus palustris mitochondrion, complete genome blastn 11968 292 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Crocodylidae Crocodylus Crocodylus palustris
2962685 2962685 PRJNA396510_P_NODE_9403_length_196_cov_1.176871_g9334_i0 PRJNA396510 9403 196 1.176871 2.30666716 Crocodylus siamensis 68455 Chordata Chordata 89.8 1.29e-13   NTclustered gi|428272586|gb|JQ479336.1| 68455 g9334 i0 78.417 5.68877551020408 139 29 70 1 11 148 96578 96716 Crocodylus siamensis immunglobulin heavy chain region genomic sequence blastn 1115 89.8 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Crocodylidae Crocodylus Crocodylus siamensis
4238954 4238954 PRJNA396510_P_NODE_12444_length_171_cov_1.672131_g12375_i0 PRJNA396510 12444 171 1.672131 2.85934401 Fringilla coelebs 37598 Chordata Chordata 52.8 0.014   NTclustered gi|2917610922|emb|OZ228690.1| 37598 g12375 i0 100 0.16374269005848 28 0 16 0 106 133 63098186 63098159 Fringilla coelebs genome assembly, chromosome: Z blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
4238970 4238970 PRJNA396510_P_NODE_2144_length_368_cov_2.887147_g2075_i0 PRJNA396510 2144 368 2.887147 10.62470096 Alligator mississippiensis 8496 Chordata Chordata 215 4.21e-51   NTclustered gi|2580337014|ref|XR_009461219.1| 8496 g2075 i0 78.107 0.918478260869565 338 74 92 0 5 342 6451 6114 PREDICTED: Alligator mississippiensis zinc finger protein 420 (LOC102561434), transcript variant X2, misc_RNA blastn 338 215 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
4907159 4907159 PRJNA396510_P_NODE_4564_length_267_cov_1.811927_g4495_i0 PRJNA396510 4564 267 1.811927 4.83784509 Mammalia 40674 Chordata Chordata 52.8 0.024   NTclustered gi|1191904021|ref|XR_002346681.1| 9823 g4495 i0 100 0.209737827715356 28 0 10 0 180 207 276 249 PREDICTED: Sus scrofa uncharacterized LOC102161749 (LOC102161749), ncRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
8065263 8065263 PRJNA396510_P_NODE_9267_length_197_cov_1.378378_g9198_i0 PRJNA396510 9267 197 1.378378 2.71540466 Mus musculus 10090 Chordata Chordata 56.5 0.001   NTclustered gi|15011724|gb|AC005302.70| 10090 g9198 i0 96.97 2.14720812182741 33 1 17 0 52 84 86969 86937 Mus musculus strain 129S6/SvEvTac chromosome 10 clone rp21-481n4, complete sequence blastn 423 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
10615823 10615823 PRJNA396510_P_NODE_16009_length_162_cov_0.902655_g15940_i0 PRJNA396510 16009 162 0.902655 1.4623011 Sus scrofa 9823 Chordata Chordata 80.5 6.18e-11   NTclustered gi|311078758|emb|CU861899.7| 9823 g15940 i0 92.857 10.0925925925926 56 3 34 1 3 57 126727 126672 Pig DNA sequence from clone CH242-15C8 on chromosome X, complete sequence blastn 1635 80.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
10615830 10615830 PRJNA396510_P_NODE_6549_length_229_cov_1.072222_g6480_i0 PRJNA396510 6549 229 1.072222 2.45538838 Alligator mississippiensis 8496 Chordata Chordata 87.9 5.6e-13   NTclustered gi|2580391908|ref|XR_001373275.3| 8496 g6480 i0 76.364 0.720524017467249 165 37 72 1 2 166 5412 5574 PREDICTED: Alligator mississippiensis uncharacterized LOC106739915 (LOC106739915), ncRNA blastn 165 87.9 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
10615831 10615831 PRJNA396510_P_NODE_6889_length_224_cov_1.165714_g6820_i0 PRJNA396510 6889 224 1.165714 2.61119936 Mus musculus 10090 Chordata Chordata 60.2 1.19e-4   NTclustered gi|21536188|gb|AC112146.3| 10090 g6820 i0 100 16.2321428571429 32 0 14 0 166 197 88757 88726 Mus musculus BAC clone RP23-101G11 from 12, complete sequence blastn 3636 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
19537804 19537804 PRJNA396510_P_NODE_2776_length_332_cov_1.081272_g2707_i0 PRJNA396510 2776 332 1.081272 3.58982304 Hyla sarda 327740 Chordata Chordata 60.2 1.87e-4   NTclustered gi|2512160518|ref|XM_056558461.1| 327740 g2707 i0 97.143 2.68373493975904 35 1 11 0 184 218 3944 3978 PREDICTED: Hyla sarda MAX network transcriptional repressor (MNT), transcript variant X2, mRNA blastn 891 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
20813543 20813543 PRJNA396510_P_NODE_1917_length_387_cov_1.041420_g1848_i0 PRJNA396510 1917 387 1.04142 4.0302954 Mus musculus 10090 Chordata Chordata 704 0   NTclustered gi|282721923|gb|GQ850526.1| 10090 g1848 i0 99.485 112.552971576227 388 1 100 1 1 387 1155 768 Mus musculus anti-human CD21 immunoglobulin heavy chain mRNA, complete cds blastn 43558 704 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
22088419 22088419 PRJNA396510_P_NODE_12178_length_173_cov_1.612903_g12109_i0 PRJNA396510 12178 173 1.612903 2.79032219 Columba livia 8932 Chordata Chordata 54.7 0.004   NTclustered gi|2728217565|ref|XM_065038787.1| 8932 g12109 i0 100 0.335260115606936 29 0 17 0 100 128 2246 2274 PREDICTED: Columba livia synaptonemal complex protein 1 (SYCP1), transcript variant X8, mRNA blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Columbiformes Columbidae Columba Columba livia
24638300 24638300 PRJNA396510_P_NODE_16140_length_162_cov_0.876106_g16071_i0 PRJNA396510 16140 162 0.876106 1.41929172 Crocodylus palustris 184238 Chordata Chordata 228 2.0899999999999995e-55   NTclustered gi|312233507|ref|NC_014706.1| 184238 g16071 i0 92.453 47.5740740740741 159 12 98 0 1 159 9962 10120 Crocodylus palustris mitochondrion, complete genome blastn 7707 228 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Crocodylidae Crocodylus Crocodylus palustris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;