RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA396510" and tax_phylum = "Ascomycota"

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tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA396510 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3629959 3629959 PRJNA396510_P_NODE_8303_length_207_cov_1.164557_g8234_i0 PRJNA396510 8303 207 1.164557 2.41063299 Ascomycota 4890 Fungi Fungi 383 5.65e-102   NTclustered gi|767813157|gb|KP114602.1| 29917 g8234 i0 100 100 207 0 100 0 1 207 59 265 Cladosporium cladosporioides strain PF3 large subunit ribosomal RNA gene, partial sequence blastn 20700 383 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Cladosporiales Cladosporiaceae Cladosporium Cladosporium cladosporioides
17656770 17656770 PRJNA396510_P_NODE_7534_length_216_cov_1.203593_g7465_i0 PRJNA396510 7534 216 1.203593 2.59976088 Dothideomycetes 147541 Fungi Fungi 331 2.19e-86   NTclustered gi|908900564|gb|KT207688.1| 5599 g7465 i0 100 82.8703703703704 179 0 83 0 38 216 306 128 Alternaria alternata strain KUC21222 28S ribosomal RNA gene, partial sequence blastn 17900 331 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Pleosporales Pleosporaceae Alternaria Alternaria alternata
25305297 25305297 PRJNA396510_P_NODE_10180_length_189_cov_1.028571_g10111_i0 PRJNA396510 10180 189 1.028571 1.94399919 Colletotrichum 5455 Fungi Fungi 254 4.14e-63   NTclustered gi|1150313177|gb|KX885104.1| 474922 g10111 i0 95.031 85.0476190476191 161 8 85 0 29 189 26043 25883 Colletotrichum gloeosporioides strain LQ33 mitochondrion, complete genome blastn 16074 254 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Glomerellales Glomerellaceae Colletotrichum Colletotrichum gloeosporioides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;