RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA396510" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 5 ✖

bioproject 1

  • PRJNA396510 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4238966 4238966 PRJNA396510_P_NODE_16084_length_162_cov_0.902655_g16015_i0 PRJNA396510 16084 162 0.902655 1.4623011 Deinococcus actinosclerus 1768108 Bacteria Bacteria 289 9.44e-74   NTclustered gi|972944657|gb|CP013910.1| 1768108 g16015 i0 98.765 167.641975308642 162 2 100 0 1 162 74023 73862 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 27158 289 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus
5515630 5515630 PRJNA396510_P_NODE_2425_length_351_cov_1.486755_g2356_i0 PRJNA396510 2425 351 1.486755 5.21851005 Deinococcus grandis 57498 Bacteria Bacteria 603 7.299999999999998e-168   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g2356 i0 97.721 204.626780626781 351 7 100 1 1 351 73991 73642 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 71824 603 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
11890744 11890744 PRJNA396510_P_NODE_4050_length_281_cov_1.659483_g3981_i0 PRJNA396510 4050 281 1.659483 4.66314723 Deinococcus actinosclerus 1768108 Bacteria Bacteria 481 2.79e-131   NTclustered gi|972944657|gb|CP013910.1| 1768108 g3981 i0 97.518 179.384341637011 282 5 100 2 1 281 74381 74661 Deinococcus actinosclerus strain BM2 chromosome, complete genome blastn 50407 481 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus actinosclerus
12557862 12557862 PRJNA396510_P_NODE_7170_length_220_cov_1.789474_g7101_i0 PRJNA396510 7170 220 1.789474 3.9368428 Deinococcus 1298 Bacteria Bacteria 407 3.61e-109   NTclustered gi|2154377219|gb|OL604406.1| 47478 g7101 i0 100 103.95 220 0 100 0 1 220 11 230 Deinococcus sp. strain AS-438 16S ribosomal RNA gene, partial sequence blastn 22869 407 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
16381574 16381574 PRJNA396510_P_NODE_15253_length_163_cov_0.894737_g15184_i0 PRJNA396510 15253 163 0.894737 1.45842131 Deinococcus 1298 Bacteria Bacteria 300 4.39e-77   NTclustered gi|442558064|gb|KC245148.1| 1282409 g15184 i0 100 103.361963190184 162 0 99 0 2 163 844 683 Deinococcus sp. HME8654 16S ribosomal RNA gene, partial sequence blastn 16848 300 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. HME8654

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;