RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA396510" and tax_clade = "Embryophyta"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Embryophyta · 6 ✖

bioproject 1

  • PRJNA396510 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5515622 5515622 PRJNA396510_P_NODE_15225_length_163_cov_0.894737_g15156_i0 PRJNA396510 15225 163 0.894737 1.45842131 Oryza sativa 4530 Plants Plants 300 4.39e-77   NTclustered gi|30725921|gb|AC099043.6| 39947 g15156 i0 100 6.20245398773006 162 0 99 0 2 163 70206 70045 Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence blastn 1011 300 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza sativa
5515626 5515626 PRJNA396510_P_NODE_16125_length_162_cov_0.902655_g16056_i0 PRJNA396510 16125 162 0.902655 1.4623011 Malus domestica 3750 Plants Plants 52.8 0.013   NTclustered gi|2810943380|gb|CP168778.1| 3750 g16056 i0 100 0.172839506172839 28 0 17 0 18 45 20799741 20799714 Malus domestica cultivar Golden Delicious chromosome 14 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rosaceae Malus Malus domestica
10615802 10615802 PRJNA396510_P_NODE_11129_length_181_cov_1.515152_g11060_i0 PRJNA396510 11129 181 1.515152 2.74242512 Triticum aestivum 4565 Plants Plants 335 1.36e-87   NTclustered gi|2123746588|ref|XR_006435168.1| 4565 g11060 i0 100 2 181 0 100 0 1 181 5608 5428 PREDICTED: Triticum aestivum homeobox protein cut-like 1 (LOC123072473), transcript variant X4, misc_RNA blastn 362 335 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
14440816 14440816 PRJNA396510_P_NODE_14232_length_165_cov_0.879310_g14163_i0 PRJNA396510 14232 165 0.87931 1.4508615 Cicer arietinum 3827 Plants Plants 305 9.59e-79   NTclustered gi|1535865752|ref|XM_004494231.3| 3827 g14163 i0 100 53.3393939393939 165 0 100 0 1 165 105 269 PREDICTED: Cicer arietinum 60S ribosomal protein L35a-1-like (LOC101514440), mRNA blastn 8801 305 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Cicer Cicer arietinum
21480833 21480833 PRJNA396510_P_NODE_15737_length_162_cov_0.902655_g15668_i0 PRJNA396510 15737 162 0.902655 1.4623011 Poaceae 4479 Plants Plants 300 4.36e-77   NTclustered gi|2155905707|emb|OV049916.1| 4529 g15668 i0 100 101 162 0 100 0 1 162 49167 49006 Oryza rufipogon genome assembly, organelle: plastid:chloroplast blastn 16362 300 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Oryza Oryza rufipogon
22088429 22088429 PRJNA396510_P_NODE_16678_length_161_cov_0.910714_g16609_i0 PRJNA396510 16678 161 0.910714 1.46624954 Allium sativum 4682 Plants Plants 171 3.54e-38   NTclustered gi|2221770600|gb|MK770769.1| 4682 g16609 i0 93.103 0.720496894409938 116 8 72 0 1 116 116 1 Allium sativum satellite AsatSAT189 sequence blastn 116 171 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asparagales Amaryllidaceae Allium Allium sativum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;