RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA395690" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA395690 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
411470 411470 PRJNA395690_P_NODE_14421_length_214_cov_1.781818_g14269_i0 PRJNA395690 14421 214 1.781818 3.81309052 Thermodesulfobacteriota bacterium 2202153 Bacteria Bacteria 209 1.06e-49   NTclustered gi|2893358420|emb|OZ220712.1| 2202153 g14269 i0 85.047 264.668224299065 214 23 99 8 4 214 1712020 1711813 MAG: Thermodesulfobacteriota bacterium isolate 564989d4-0a31-48dd-8468-51938819ad86 genome assembly, chromosome: 1 blastn 56639 209 1 Bacteria   Pseudomonadati Thermodesulfobacteriota         Thermodesulfobacteriota bacterium
411710 411710 PRJNA395690_P_NODE_33641_length_163_cov_0.894737_g33489_i0 PRJNA395690 33641 163 0.894737 1.45842131 Desulfobulbus oralis 1986146 Bacteria Bacteria 58.4 2.92e-4   NTclustered gi|1343450889|gb|CP021255.1| 1986146 g33489 i0 80.22 1.14110429447853 91 6 91 7 1 85 1109050 1109134 Desulfobulbus oralis strain HOT041/ORNL chromosome, complete genome blastn 186 58.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobulbia Desulfobulbales Desulfobulbaceae Desulfobulbus Desulfobulbus oralis
7456977 7456977 PRJNA395690_P_NODE_33606_length_163_cov_0.894737_g33454_i0 PRJNA395690 33606 163 0.894737 1.45842131 Desulfuromonadales 69541 Bacteria Bacteria 189 9.92e-44   NTclustered gi|2304895958|gb|CP092109.1| 2847045 g33454 i0 88.608 169.343558282209 158 14 96 4 8 163 1359638 1359793 Geoalkalibacter halelectricus strain SAP-1 chromosome blastn 27603 189 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Desulfuromonadales Geoalkalibacteraceae Geoalkalibacter Geoalkalibacter halelectricus
20205281 20205281 PRJNA395690_P_NODE_6476_length_316_cov_2.411985_g6325_i0 PRJNA395690 6476 316 2.411985 7.6218726 Geobacter 28231 Bacteria Bacteria 265 3.49e-66   NTclustered gi|779731694|gb|CP010430.1| 35554 g6325 i0 89.524 125.351265822785 210 20 66 2 98 306 2783611 2783403 Geobacter sulfurreducens strain AM-1 genome blastn 39611 265 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geobacter Geobacter sulfurreducens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;