RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA395690" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA395690 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6789324 6789324 PRJNA395690_P_NODE_18286_length_190_cov_2.141844_g18134_i0 PRJNA395690 18286 190 2.141844 4.0695036 Adineta vaga complex sp. B JFF-2016 1813165 Rotifera other_Eukaryota 346 6.690000000000001e-91   NTclustered gi|1005055631|gb|KU860774.1| 1813165 g18134 i0 99.474 31.1157894736842 190 1 100 0 1 190 1119 1308 Adineta vaga complex sp. B JFF-2016 isolate H158a 28S ribosomal RNA gene, partial sequence blastn 5912 346 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga complex sp. B JFF-2016
14440309 14440309 PRJNA395690_P_NODE_1212_length_709_cov_72.706061_g1083_i0 PRJNA395690 1212 709 72.706061 515.48597249 Brachionus calyciflorus 104777 Rotifera other_Eukaryota 228 1.1e-54   NTclustered gi|2106370087|gb|MZ706951.1| 104777 g1083 i0 77.218 7.87588152327221 417 77 58 14 292 701 7108 7513 Brachionus calyciflorus chromosome I mitochondrion, complete sequence blastn 5584 228 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
15714353 15714353 PRJNA395690_P_NODE_273_length_1492_cov_12.485793_g218_i0 PRJNA395690 273 1492 12.485793 186.28803156 Brachionus rubens 392764 Rotifera other_Eukaryota 673 0   NTclustered gi|632795131|gb|KJ489418.1| 392764 g218 i0 75.408 13.7855227882038 1472 319 97 37 4 1451 5618 7070 Brachionus rubens chromosome II mitochondrion, complete sequence blastn 20568 673 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
15714578 15714578 PRJNA395690_P_NODE_9633_length_262_cov_1.323944_g9481_i0 PRJNA395690 9633 262 1.323944 3.46873328 Lepadella triba 497826 Rotifera other_Eukaryota 385 2.08e-102   NTclustered gi|166014122|gb|EU252111.1| 497826 g9481 i0 98.63 47.2671755725191 219 0 84 3 1 219 447 662 Lepadella triba internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 12384 385 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lepadellidae Lepadella Lepadella triba
19537313 19537313 PRJNA395690_P_NODE_116_length_2072_cov_6.084034_g90_i0 PRJNA395690 116 2072 6.084034 126.06118448 Brachionus rubens 392764 Rotifera other_Eukaryota 652 0   NTclustered gi|632795126|gb|KJ489417.1| 392764 g90 i0 80.322 20.4160231660232 869 165 42 5 921 1786 1 866 Brachionus rubens chromosome I mitochondrion, complete sequence blastn 42302 652 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rubens
20813281 20813281 PRJNA395690_P_NODE_237_length_1598_cov_11.043899_g187_i0 PRJNA395690 237 1598 11.043899 176.48150602 Asplanchna sp. 3231738 Rotifera other_Eukaryota 1216 0   NTclustered gi|2778092484|gb|PP988072.1| 3231738 g187 i0 81.039 49.9311639549437 1540 280 96 10 52 1582 1561 25 Asplanchna sp. chromosome II mitochondrion, complete sequence blastn 79790 1216 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Asplanchnidae Asplanchna Asplanchna sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;