RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA395690" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA395690 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9339905 9339905 PRJNA395690_P_NODE_34308_length_162_cov_1.353982_g34156_i0 PRJNA395690 34308 162 1.353982 2.19345084 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 60.2 8.06e-5   NTclustered gi|687749615|emb|LK441910.1| 57078 g34156 i0 100 12.1172839506173 32 0 20 0 69 100 1837 1868 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0047001 blastn 1963 60.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
15714581 15714581 PRJNA395690_P_NODE_9933_length_258_cov_1.363636_g9781_i0 PRJNA395690 9933 258 1.363636 3.51818088 Dicrocoelium dendriticum 57078 Platyhelminthes Platyhelminthes 52.8 0.023   NTclustered gi|687264630|emb|LK423946.1| 57078 g9781 i0 100 0.108527131782946 28 0 11 0 204 231 1994 2021 Dicrocoelium dendriticum genome assembly D_dendriticum_Leon_v1_0_4, scaffold DDEL_scaffold0029888 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Dicrocoeliidae Dicrocoelium Dicrocoelium dendriticum
24638233 24638233 PRJNA395690_P_NODE_7860_length_288_cov_1.414226_g7708_i0 PRJNA395690 7860 288 1.414226 4.07297088 Opisthorchis viverrini 6198 Platyhelminthes Platyhelminthes 52.8 0.027   NTclustered gi|684373605|ref|XM_009166218.1| 6198 g7708 i0 100 0.0972222222222222 28 0 10 0 99 126 921 948 Opisthorchis viverrini hypothetical protein partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Opisthorchis Opisthorchis viverrini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;