RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA395690" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA395690 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11890317 11890317 PRJNA395690_P_NODE_12210_length_233_cov_1.592391_g12058_i0 PRJNA395690 12210 233 1.592391 3.71027103 Candidatus Manganitrophus sp. 2927580 Bacteria Bacteria 65.8 2.68e-6   NTclustered gi|2449729286|gb|CP114553.1| 2927580 g12058 i0 100 0.583690987124464 35 0 15 0 59 93 2713777 2713811 MAG: Candidatus Manganitrophus sp. isolate GAC1 chromosome, complete genome blastn 136 65.8 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae Candidatus Manganitrophus Candidatus Manganitrophus sp.
22755883 22755883 PRJNA395690_P_NODE_13838_length_219_cov_0.900000_g13686_i0 PRJNA395690 13838 219 0.9 1.971 Bacteria 2 Bacteria Bacteria 115 2.44e-21   NTclustered gi|298571308|gb|HM454279.1| 798576 g13686 i0 76.889 52.8219178082192 225 38 100 13 1 219 6337 6121 Uncultured Nitrospirae bacterium MY2-1F genomic sequence blastn 11568 115 1 Bacteria   Pseudomonadati Nitrospirota         uncultured Nitrospirae bacterium MY2-1F
23363600 23363600 PRJNA395690_P_NODE_15039_length_209_cov_2.550000_g14887_i0 PRJNA395690 15039 209 2.55 5.3295 Nitrospirota bacterium 2026887 Bacteria Bacteria 84.2 6.5e-12   NTclustered gi|2108317525|gb|CP070669.1| 2026887 g14887 i0 90.625 22.5263157894737 64 4 31 2 37 100 568012 568073 MAG: Nitrospirae bacterium isolate bin746 chromosome blastn 4708 84.2 1 Bacteria   Pseudomonadati Nitrospirota         Nitrospirota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;