RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA395690" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA395690 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11282303 11282303 PRJNA395690_P_NODE_4629_length_368_cov_3.617555_g4480_i0 PRJNA395690 4629 368 3.617555 13.3126024 Ctena 102298 Mollusca Mollusca 148 4.33e-31   NTclustered gi|2129023951|gb|OL361786.1| 2892552 g4480 i0 91.589 5.33695652173913 107 9 29 0 158 264 4053 4159 Ctena cf. galapagana NHMUK 20210086 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 1964 148 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Lucinida Lucinidae Ctena Ctena cf. galapagana NHMUK 20210086
18263373 18263373 PRJNA395690_P_NODE_31375_length_165_cov_0.879310_g31223_i0 PRJNA395690 31375 165 0.87931 1.4508615 Mytilus trossulus 6551 Mollusca Mollusca 67.6 4.93e-7   NTclustered gi|2694127764|ref|XM_063540933.1| 6551 g31223 i0 84.058 0.587878787878788 69 11 42 0 97 165 1159 1091 PREDICTED: Mytilus trossulus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A-like (LOC134681349), mRNA blastn 97 67.6 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus trossulus
22088364 22088364 PRJNA395690_P_NODE_7118_length_303_cov_1.192913_g6966_i0 PRJNA395690 7118 303 1.192913 3.61452639 Mya arenaria 6604 Mollusca Mollusca 60.2 1.69e-4   NTclustered gi|2427531503|ref|XM_052963179.1| 6604 g6966 i0 97.143 0.415841584158416 35 1 12 0 203 237 1802 1836 PREDICTED: Mya arenaria uncharacterized LOC128244994 (LOC128244994), partial mRNA blastn 126 60.2 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Myida Myidae Mya Mya arenaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;