RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA395690" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA395690 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9339934 9339934 PRJNA395690_P_NODE_36528_length_159_cov_2.445455_g36376_i0 PRJNA395690 36528 159 2.445455 3.88827345 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 215 1.59e-51   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g36376 i0 91.195 38.6289308176101 159 13 99 1 1 158 2075338 2075496 Gemmatimonas phototrophica strain AP64, complete genome blastn 6142 215 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
10615313 10615313 PRJNA395690_P_NODE_11089_length_244_cov_2.051282_g10937_i0 PRJNA395690 11089 244 2.051282 5.00512808 Longimicrobiales bacterium 2910168 Bacteria Bacteria 102 2.15e-17   NTclustered gi|2575820295|emb|OY730414.1| 2910168 g10937 i0 84.112 53.2172131147541 107 15 43 2 11 116 1273586 1273691 MAG: Longimicrobiales bacterium isolate 35361606-ee58-41ba-9638-b7483a57a1ce genome assembly, chromosome: 1 blastn 12985 102 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
11890617 11890617 PRJNA395690_P_NODE_37010_length_154_cov_3.314286_g36857_i0 PRJNA395690 37010 154 3.314286 5.10400044 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 139 9.43e-29   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g36857 i0 88.034 107.025974025974 117 14 76 0 38 154 806351 806467 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 16482 139 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
21480736 21480736 PRJNA395690_P_NODE_31477_length_165_cov_0.879310_g31325_i0 PRJNA395690 31477 165 0.87931 1.4508615 Gemmatimonas 173479 Bacteria Bacteria 294 2.08e-75   NTclustered gi|470475286|ref|NR_076270.1| 173480 g31325 i0 98.788 34.1333333333333 165 2 100 0 1 165 969 1133 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 5632 294 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;