RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA395690" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA395690 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
411653 411653 PRJNA395690_P_NODE_28901_length_167_cov_0.864407_g28749_i0 PRJNA395690 28901 167 0.864407 1.44355969 Leishmania sp. Ghana 2012 LV757 2803181 Euglenozoa other_Eukaryota 159 8.02e-35   NTclustered gi|2795013001|ref|XM_067840171.1| 2803181 g28749 i0 84.906 67.3592814371257 159 22 95 2 1 158 158 1 Leishmania sp. Ghana 2012 LV757 uncharacterized protein (GH5_00022), partial mRNA blastn 11249 159 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania sp. Ghana 2012 LV757
2962353 2962353 PRJNA395690_P_NODE_22643_length_180_cov_1.557252_g22491_i0 PRJNA395690 22643 180 1.557252 2.8030536 Peranema trichophorum 56466 Euglenozoa other_Eukaryota 241 3.04e-59   NTclustered gi|27461806|gb|AY130826.1| 56466 g22491 i0 92.398 0.95 171 10 94 3 12 180 732 563 Peranema trichophorum voucher Carolina Biol. Supp. Co. (CBS) CE 13-1838 large subunit ribosomal RNA gene, partial sequence blastn 171 241 1 Eukaryota Discoba   Euglenozoa Euglenida Heteronematales Peranemidae Peranema Peranema trichophorum
11282180 11282180 PRJNA395690_P_NODE_21409_length_183_cov_1.522388_g21257_i0 PRJNA395690 21409 183 1.522388 2.78597004 Trypanosoma 5690 Euglenozoa other_Eukaryota 261 2.38e-65   NTclustered gi|162233|gb|M63699.1|TRBRGS1 5693 g21257 i0 92.35 120.486338797814 183 14 100 0 1 183 256 74 T.cruzi S3 ribosomal RNA gene blastn 22049 261 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma cruzi
15106754 15106754 PRJNA395690_P_NODE_31672_length_164_cov_1.773913_g31520_i0 PRJNA395690 31672 164 1.773913 2.90921732 Leishmania 5658 Euglenozoa other_Eukaryota 191 2.78e-44   NTclustered gi|440222375|gb|JX030043.1| 5659 g31520 i0 87.574 39.0914634146341 169 16 100 5 1 164 1578 1746 Leishmania amazonensis isolate LaPH8.rRNA.13 28S ribosomal RNA (LSU-alpha), partial sequence blastn 6411 191 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis
17656536 17656536 PRJNA395690_P_NODE_14774_length_211_cov_206.518519_g14622_i0 PRJNA395690 14774 211 206.518519 435.75407509 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 272 1.3099999999999999e-68   NTclustered gi|2414483|emb|Y00055.1| 5656 g14622 i0 91.457 114.473933649289 199 16 94 1 10 208 7032 6835 Crithidia fasciculata ribosomal DNA repeat (complete) blastn 24154 272 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Crithidia Crithidia fasciculata
17656560 17656560 PRJNA395690_P_NODE_17994_length_191_cov_16.436620_g17842_i0 PRJNA395690 17994 191 16.43662 31.3939442 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 243 9.08e-60   NTclustered gi|440222388|gb|JX030056.1| 5659 g17842 i0 93.293 72.8848167539267 164 11 86 0 28 191 182 19 Leishmania amazonensis isolate LaPH8.rRNA.32 28S ribosomal RNA (LSU-delta M2), partial sequence blastn 13921 244 0.995901639344262 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;