RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA395690" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 8 ✖

tax_kingdom 1

bioproject 1

  • PRJNA395690 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
411716 411716 PRJNA395690_P_NODE_34061_length_162_cov_1.831858_g33909_i0 PRJNA395690 34061 162 1.831858 2.96760996 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 174 2.76e-39   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g33909 i0 89.781 6.75925925925926 137 13 85 1 1 137 3251354 3251489 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 1095 174 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
3629899 3629899 PRJNA395690_P_NODE_7803_length_289_cov_1.462500_g7651_i0 PRJNA395690 7803 289 1.4625 4.226625 Pseudomonadati 3379134 Bacteria Bacteria 311 4e-80   NTclustered gi|469926873|gb|CP003538.1| 349215 g7651 i0 86.254 327.166089965398 291 34 99 5 2 289 464866 464579 Micavibrio aeruginosavorus EPB, complete genome blastn 94551 311 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
6789436 6789436 PRJNA395690_P_NODE_2786_length_469_cov_1.635714_g2638_i0 PRJNA395690 2786 469 1.635714 7.67149866 Fluviispira sanaruensis 2493639 Bacteria Bacteria 73.1 3.5e-8   NTclustered gi|1566193515|dbj|AP019368.1| 2493639 g2638 i0 83.544 0.842217484008529 79 11 16 1 143 219 398774 398852 Silvanigrellales bacterium RF1110005 DNA, complete genome blastn 395 73.1 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Fluviispira Fluviispira sanaruensis
10615512 10615512 PRJNA395690_P_NODE_24069_length_177_cov_1.195312_g23917_i0 PRJNA395690 24069 177 1.195312 2.11570224 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 180 6.57e-41   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g23917 i0 92.126 63.5762711864407 127 10 72 0 47 173 3251793 3251667 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 11253 180 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
11890475 11890475 PRJNA395690_P_NODE_24590_length_175_cov_3.412698_g24438_i0 PRJNA395690 24590 175 3.412698 5.9722215 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 200 4.979999999999999e-47   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g24438 i0 88.623 255.497142857143 167 15 94 4 4 168 3250794 3250630 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 44712 200 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
12557595 12557595 PRJNA395690_P_NODE_11750_length_237_cov_1.771277_g11598_i0 PRJNA395690 11750 237 1.771277 4.19792649 Bdellovibrio 958 Bacteria Bacteria 219 1.9799999999999994e-52   NTclustered gi|2800917394|gb|CP168972.1| 959 g11598 i0 83.333 97.3164556962025 258 21 100 8 1 237 749174 749430 Bdellovibrio bacteriovorus strain Bd19 chromosome, complete genome blastn 23064 219 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
16989296 16989296 PRJNA395690_P_NODE_7234_length_300_cov_1.406375_g7082_i0 PRJNA395690 7234 300 1.406375 4.219125 Bdellovibrio sp. qaytius 1916293 Bacteria Bacteria 263 1.18e-65   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g7082 i0 85.714 67.5166666666667 252 32 84 4 12 262 666622 666870 Bdellovibrio sp. qaytius chromosome, complete genome blastn 20255 263 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius
22755884 22755884 PRJNA395690_P_NODE_13858_length_218_cov_2.384615_g13706_i0 PRJNA395690 13858 218 2.384615 5.1984607 Pseudobdellovibrionaceae 213483 Bacteria Bacteria 198 2.3399999999999998e-46   NTclustered gi|1552089877|gb|CP025734.1| 1916293 g13706 i0 83.182 85.6559633027523 220 33 99 4 1 217 665951 665733 Bdellovibrio sp. qaytius chromosome, complete genome blastn 18673 198 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. qaytius

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;