RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA395690" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA395690 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22756010 22756010 PRJNA395690_P_NODE_31558_length_164_cov_2.913043_g31406_i0 PRJNA395690 31558 164 2.913043 4.77739052 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 95.3 2.24e-15   NTclustered gi|21039067|gb|AF401507.1| 5807 g31406 i0 100 138.341463414634 51 0 31 0 105 155 915 865 Cryptosporidium parvum isolate H299 heat shock protein 70 gene, partial cds blastn 22688 95.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium parvum
24030819 24030819 PRJNA395690_P_NODE_35819_length_161_cov_0.910714_g35667_i0 PRJNA395690 35819 161 0.910714 1.46624954 Haemosporida 5819 SAR_Eukaryotes SAR_Eukaryotes 86.1 1.32e-12   NTclustered gi|1610217327|gb|MK695424.1| 191679 g35667 i0 87.179 42.1552795031056 78 6 47 3 84 159 200 125 Haemoproteus sp. isolate PACVAL01 from Brazil cytochrome b (cytB) gene, partial cds; mitochondrial blastn 6787 86.1 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Haemoproteidae Haemoproteus Haemoproteus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;