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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA395690" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 9 ✖

bioproject 1

  • PRJNA395690 · 9 ✖

analysis 1

  • blastn · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1078965 1078965 PRJNA395690_P_NODE_14101_length_217_cov_0.910714_g13949_i0 PRJNA395690 14101 217 0.910714 1.97624938 Viridiplantae 33090 Plants Plants 307 3.7e-79   NTclustered gi|162134340|gb|EU123979.1| 160068 g13949 i0 92.202 121.875576036866 218 16 100 1 1 217 2025 2242 Trebouxia aggregata strain SAG 219-1d large subunit ribosomal RNA (rrl) gene, complete sequence; and putative site-specific DNA endonuclease (orf210) and hypothetical protein (orf277) genes, complete cds; chloroplast blastn 26447 309 0.993527508090615 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
3629866 3629866 PRJNA395690_P_NODE_36163_length_161_cov_0.910714_g36011_i0 PRJNA395690 36163 161 0.910714 1.46624954 Eukaryota 2759 Plants Plants 137 3.59e-28   NTclustered gi|760444892|ref|XM_011401213.1| 3075 g36011 i0 82.39 36.0496894409938 159 26 98 2 4 161 650 493 Auxenochlorella protothecoides RuvB-like 1 partial mRNA blastn 5804 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
5515365 5515365 PRJNA395690_P_NODE_2665_length_479_cov_1.269767_g2517_i0 PRJNA395690 2665 479 1.269767 6.08218393 Polytomella sp. Pringsheim 198.80 37502 Plants Plants 193 2.63e-44   NTclustered gi|28193497|emb|AJ439528.1| 37502 g2517 i0 79.225 34.2526096033403 284 53 58 4 171 450 595 314 Polytomella sp. 'Pringsheim 198.80' mRNA for 40S ribosomal protein s5 (rs5 gene) blastn 16407 193 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Polytomella Polytomella sp. Pringsheim 198.80
8064873 8064873 PRJNA395690_P_NODE_18007_length_191_cov_2.971831_g17855_i0 PRJNA395690 18007 191 2.971831 5.67619721 Koliella sp. HS-2024a 3231931 Plants Plants 139 1.23e-28   NTclustered gi|2754686564|gb|PP990794.1| 3231931 g17855 i0 88.235 87.1361256544503 119 11 61 3 21 137 8823 8940 Koliella sp. HS-2024a strain FACHB-3607 mitochondrion, complete genome blastn 16643 139 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella sp. HS-2024a
8064976 8064976 PRJNA395690_P_NODE_26147_length_172_cov_1.292683_g25995_i0 PRJNA395690 26147 172 1.292683 2.22341476 Polulichloris maxima 2704661 Plants Plants 222 1.04e-53   NTclustered gi|2473928686|ref|NC_072905.1| 2704661 g25995 i0 92.308 96.1802325581395 156 12 91 0 1 156 126487 126332 Polulichloris maxima clone L123 chloroplast, complete genome blastn 16543 222 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Polulichloris Polulichloris maxima
8731883 8731883 PRJNA395690_P_NODE_6807_length_309_cov_1.361538_g6655_i0 PRJNA395690 6807 309 1.361538 4.20715242 Marvania 97104 Plants Plants 137 7.74e-28   NTclustered gi|2724824493|gb|PP746561.1| 97105 g6655 i0 79.512 10.5954692556634 205 33 65 8 33 234 1286 1484 Marvania geminata culture SAG:12.88 mitochondrion, complete genome blastn 3274 137 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Marvania Marvania geminata
12557744 12557744 PRJNA395690_P_NODE_32130_length_164_cov_0.886957_g31978_i0 PRJNA395690 32130 164 0.886957 1.45460948 Scenedesmaceae 3086 Plants Plants 252 1.26e-62   NTclustered gi|2312613210|ref|NC_066651.1| 77547 g31978 i0 95 148.981707317073 160 8 98 0 5 164 74783 74942 Desmodesmus abundans strain FBCC-A1277 chloroplast, complete genome blastn 24433 252 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Desmodesmus Desmodesmus abundans
17656589 17656589 PRJNA395690_P_NODE_21674_length_182_cov_7.924812_g21522_i0 PRJNA395690 21674 182 7.924812 14.42315784 Eukaryota 2759 Plants Plants 274 3.03e-69   NTclustered gi|1255307117|gb|KY198301.1| 3067 g21522 i0 100 85.4395604395604 148 0 99 0 35 182 376 229 Volvox carteri isolate EMBOSS_001 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15550 274 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
18263358 18263358 PRJNA395690_P_NODE_29675_length_166_cov_0.871795_g29523_i0 PRJNA395690 29675 166 0.871795 1.4471797 uncultured Scenedesmus 223195 Plants Plants 224 2.7799999999999995e-54   NTclustered gi|430000717|gb|JX877643.1| 223195 g29523 i0 96.324 70.6144578313253 136 5 82 0 31 166 1 136 Uncultured Scenedesmus clone HP04 23S ribosomal RNA gene, partial sequence blastn 11722 224 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae   uncultured Scenedesmus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;