RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA395690" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA395690 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15714359 15714359 PRJNA395690_P_NODE_28053_length_167_cov_1.703390_g27901_i0 PRJNA395690 28053 167 1.70339 2.8446613 Candidatus Methylomirabilis oxygeniifera 671143 Bacteria Bacteria 52.8 0.014   NTclustered gi|258590833|emb|FP565575.1| 671143 g27901 i0 100 0.167664670658683 28 0 17 0 73 100 108454 108427 Candidatus Methylomirabilis oxyfera complete genome blastn 28 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota Candidatus Methylomirabilia Candidatus Methylomirabilales Candidatus Methylomirabilaceae Candidatus Methylomirabilis Candidatus Methylomirabilis oxygeniifera
22755931 22755931 PRJNA395690_P_NODE_20998_length_184_cov_1.511111_g20846_i0 PRJNA395690 20998 184 1.511111 2.78044424 Bacteria 2 Bacteria Bacteria 329 6.47e-86   NTclustered gi|1950821269|gb|CP066696.1| 2026720 g20846 i0 98.913 362.766304347826 184 2 100 0 1 184 800298 800115 Candidatus Saccharibacteria bacterium isolate NC_groundwater_1927_Pr3_S-0.2um_48_6 chromosome blastn 66749 329 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
24638132 24638132 PRJNA395690_P_NODE_34520_length_162_cov_0.902655_g34368_i0 PRJNA395690 34520 162 0.902655 1.4623011 Candidatus Saccharibacteria bacterium oral taxon 955 2572087 Bacteria Bacteria 278 2.04e-70   NTclustered gi|1663049602|gb|CP040008.1| 2572087 g34368 i0 97.531 56.4814814814815 162 4 100 0 1 162 139391 139552 Candidatus Saccharibacteria bacterium oral taxon 955 strain PM004 chromosome, complete genome blastn 9150 278 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 955

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;