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contig_metadata

24 rows where analysis = "blastn", bioproject = "PRJNA395690" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 24 ✖

bioproject 1

  • PRJNA395690 · 24 ✖

analysis 1

  • blastn · 24 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
411844 411844 PRJNA395690_P_NODE_881_length_833_cov_4.489796_g764_i0 PRJNA395690 881 833 4.489796 37.40000068 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 1109 0   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g764 i0 90.67 38.5042016806723 836 75 100 1 1 833 3075 2240 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 32074 1109 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
1686647 1686647 PRJNA395690_P_NODE_5622_length_338_cov_2.159170_g5472_i0 PRJNA395690 5622 338 2.15917 7.2979946 Nebela tincta 318538 Tubulinea other_Eukaryota 130 1.43e-25   NTclustered gi|410369741|gb|JX682597.1| 318538 g5472 i0 75.655 27.7810650887574 267 61 79 4 1 267 61 323 Nebela tincta isolate tin62 cytochrome oxidase subunit 1-like (COI) gene, partial sequence; mitochondrial blastn 9390 130 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Hyalospheniidae Nebela Nebela tincta
4238526 4238526 PRJNA395690_P_NODE_10524_length_251_cov_1.514851_g10372_i0 PRJNA395690 10524 251 1.514851 3.80227601 Physarum polycephalum 5791 Evosea other_Eukaryota 285 2.06e-72   NTclustered gi|414783|emb|X75592.1| 5791 g10372 i0 87.251 6.60159362549801 251 30 99 2 1 250 1592 1841 P. polycephalum M3C mitochondrial SSU gene for 17S ribosomal RNA(pSSU) blastn 1657 285 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
4238754 4238754 PRJNA395690_P_NODE_28744_length_167_cov_0.864407_g28592_i0 PRJNA395690 28744 167 0.864407 1.44355969 Physarum licheniforme 2116612 Evosea other_Eukaryota 261 2.14e-65   NTclustered gi|2049856465|gb|MG963624.1| 2116612 g28592 i0 95.181 8.49101796407186 166 7 99 1 1 166 5 169 Physarum licheniforme strain MA-Fungi 91208 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 1418 261 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum licheniforme
5515287 5515287 PRJNA395690_P_NODE_1945_length_558_cov_1.813360_g1798_i0 PRJNA395690 1945 558 1.81336 10.1185488 Didymium iridis 5793 Evosea other_Eukaryota 880 0   NTclustered gi|2687|emb|X60210.1| 5793 g1798 i0 95.179 20.5089605734767 560 22 100 5 1 558 681 1237 D.iridis LSU rRNA gene blastn 11444 880 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
6789401 6789401 PRJNA395690_P_NODE_25106_length_174_cov_2.016000_g24954_i0 PRJNA395690 25106 174 2.016 3.50784 Physarum cinereum 289951 Evosea other_Eukaryota 259 8.04e-65   NTclustered gi|374255699|emb|HE614599.1| 289951 g24954 i0 93.678 1 174 10 100 1 1 174 826 654 Physarum cinereum partial 18S rRNA gene, strain Idn-2 blastn 174 259 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum cinereum
7456824 7456824 PRJNA395690_P_NODE_10066_length_256_cov_1.850242_g9914_i0 PRJNA395690 10066 256 1.850242 4.73661952 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 457 4.22e-124   NTclustered gi|300078496|gb|GU001158.1| 5778 g9914 i0 98.828 29.8671875 256 3 100 0 1 256 922 1177 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7646 457 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8065036 8065036 PRJNA395690_P_NODE_31027_length_165_cov_0.879310_g30875_i0 PRJNA395690 31027 165 0.87931 1.4508615 Arcyria globosa 1334515 Evosea other_Eukaryota 196 6.02e-46   NTclustered gi|501417068|gb|JX481282.1| 1334515 g30875 i0 88.485 100.042424242424 165 16 100 3 1 165 1374 1535 Arcyria globosa voucher AMFD252 18S ribosomal RNA gene, partial sequence blastn 16507 196 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria globosa
8065163 8065163 PRJNA395690_P_NODE_6167_length_323_cov_8.613139_g6017_i0 PRJNA395690 6167 323 8.613139 27.82043897 Didymium nigripes 75757 Evosea other_Eukaryota 196 1.32e-45   NTclustered gi|568219335|gb|KF743889.1| 75757 g6017 i0 89.677 7.85139318885449 155 15 48 1 147 300 470 624 Didymium nigripes voucher MCCNNU00130 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 2536 196 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium nigripes
11890655 11890655 PRJNA395690_P_NODE_5930_length_330_cov_1.334520_g5780_i0 PRJNA395690 5930 330 1.33452 4.403916 Amoebozoa sp. 1892891 Root_unresolved Root_unresolved 582 8.91e-162   NTclustered gi|2651357789|gb|PP174304.1| 1892891 g5780 i0 98.485 49.7030303030303 330 5 100 0 1 330 3287 3616 Amoebozoa sp. isolate 114_WLI small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16402 582 1 Eukaryota Amoebozoa             Amoebozoa sp.
14440310 14440310 PRJNA395690_P_NODE_12172_length_233_cov_9.097826_g12020_i0 PRJNA395690 12172 233 9.097826 21.19793458 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 331 2.39e-86   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g12020 i0 92.275 1 233 18 100 0 1 233 4307 4075 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 233 331 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
15714521 15714521 PRJNA395690_P_NODE_6353_length_319_cov_1.511111_g6202_i0 PRJNA395690 6353 319 1.511111 4.82044409 Physarum polycephalum 5791 Evosea other_Eukaryota 449 9.08e-122   NTclustered gi|414783|emb|X75592.1| 5791 g6202 i0 92.163 35.9811912225705 319 23 100 1 1 319 19 335 P. polycephalum M3C mitochondrial SSU gene for 17S ribosomal RNA(pSSU) blastn 11478 449 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
16988950 16988950 PRJNA395690_P_NODE_14514_length_213_cov_47.670732_g14362_i0 PRJNA395690 14514 213 47.670732 101.53865916 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 270 4.75e-68   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g14362 i0 97.468 73.2488262910798 158 4 74 0 46 203 1675 1832 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 15602 270 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
16989205 16989205 PRJNA395690_P_NODE_3374_length_427_cov_6.984127_g3225_i0 PRJNA395690 3374 427 6.984127 29.82222229 Fuligo septica 159720 Evosea other_Eukaryota 202 3.86e-47   NTclustered gi|37515398|emb|AJ584697.1| 159720 g3225 i0 93.985 1.192037470726 133 8 31 0 295 427 14003 13871 Fuligo septica 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2 and 28S rRNA gene, isolate NY-1 blastn 509 202 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo septica
18263240 18263240 PRJNA395690_P_NODE_21235_length_184_cov_1.096296_g21083_i0 PRJNA395690 21235 184 1.096296 2.01718464 Cryptodifflugia oviformis 1165352 Tubulinea other_Eukaryota 283 5.11e-72   NTclustered gi|2517949732|gb|OR125031.1| 1165352 g21083 i0 94.565 31.0217391304348 184 9 100 1 1 184 884 702 Cryptodifflugia oviformis isolate strain_6 small subunit ribosomal RNA gene, partial sequence blastn 5708 283 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia oviformis
19537337 19537337 PRJNA395690_P_NODE_13396_length_222_cov_2.063584_g13244_i0 PRJNA395690 13396 222 2.063584 4.58115648 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 183 6.689999999999998e-42   NTclustered gi|470514016|ref|XM_004352683.1| 1257118 g13244 i0 82.464 73.018018018018 211 35 95 2 11 220 288 79 Acanthamoeba castellanii str. Neff ribosomal protein S19, putative (ACA1_067910), partial mRNA blastn 16210 183 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
19537410 19537410 PRJNA395690_P_NODE_1736_length_595_cov_1.562271_g1592_i0 PRJNA395690 1736 595 1.562271 9.29551245 Didymium iridis 5793 Evosea other_Eukaryota 1037 0   NTclustered gi|2687|emb|X60210.1| 5793 g1592 i0 98.148 26.2453781512605 594 11 99 0 1 594 2097 2690 D.iridis LSU rRNA gene blastn 15616 1037 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
19537682 19537682 PRJNA395690_P_NODE_4076_length_391_cov_1.356725_g3927_i0 PRJNA395690 4076 391 1.356725 5.30479475 Didymium iridis 5793 Evosea other_Eukaryota 579 1.3899999999999997e-160   NTclustered gi|116010574|emb|AM407419.1| 5793 g3927 i0 93.367 67.8823529411765 392 24 100 2 1 391 1173 783 Didymium iridis partial 26S rRNA gene, isolate Pan3-3 blastn 26542 579 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium iridis
20813299 20813299 PRJNA395690_P_NODE_2577_length_486_cov_1.718535_g2429_i0 PRJNA395690 2577 486 1.718535 8.3520801 Physarum cinereum 289951 Evosea other_Eukaryota 691 0   NTclustered gi|374255699|emb|HE614599.1| 289951 g2429 i0 92.387 62.40329218107 486 36 100 1 1 486 81 565 Physarum cinereum partial 18S rRNA gene, strain Idn-2 blastn 30328 691 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum cinereum
22088352 22088352 PRJNA395690_P_NODE_6458_length_317_cov_0.977612_g6307_i0 PRJNA395690 6458 317 0.977612 3.09903004 Dianema depressum 2951075 Evosea other_Eukaryota 75 6.34e-9   NTclustered gi|2250222256|gb|ON713367.1| 2951075 g6307 i0 92.308 6.96845425867508 52 4 16 0 266 317 857 806 Dianema depressum voucher MA80673 small subunit ribosomal RNA gene, partial sequence blastn 2209 75 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Dianemataceae Dianema Dianema depressum
23363560 23363560 PRJNA395690_P_NODE_11959_length_235_cov_1.903226_g11807_i0 PRJNA395690 11959 235 1.903226 4.4725811 Physarum polycephalum 5791 Evosea other_Eukaryota 217 7.06e-52   NTclustered gi|326632058|gb|HQ849399.1| 5791 g11807 i0 83.682 59.4 239 29 99 9 2 235 863 630 Physarum polycephalum strain M3CVIII 23S large subunit ribosomal RNA, complete sequence; mitochondrial blastn 13959 217 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Physarum Physarum polycephalum
23363858 23363858 PRJNA395690_P_NODE_35099_length_162_cov_0.902655_g34947_i0 PRJNA395690 35099 162 0.902655 1.4623011 Ptolemeba bulliensis 1525729 Tubulinea other_Eukaryota 76.8 8e-10   NTclustered gi|1255287463|dbj|LC272071.1| 1525729 g34947 i0 86.957 0.425925925925926 69 7 43 1 42 110 965 899 Ptolemeba bulliensis gene for 18S ribosomal RNA, partial sequence, strain: ATCC 50249 blastn 69 76.8 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Ptolemeba Ptolemeba bulliensis
24637809 24637809 PRJNA395690_P_NODE_10240_length_254_cov_1.424390_g10088_i0 PRJNA395690 10240 254 1.42439 3.6179506 Didymium sp. CCIKV 1215981 Evosea other_Eukaryota 470 5.37e-128   NTclustered gi|399764169|gb|JQ271680.1| 1215981 g10088 i0 100 85.5590551181102 254 0 100 0 1 254 1120 867 Didymium sp. CCIKV 18S ribosomal RNA gene, partial sequence blastn 21732 470 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium sp. CCIKV
24637868 24637868 PRJNA395690_P_NODE_14360_length_215_cov_1.054217_g14208_i0 PRJNA395690 14360 215 1.054217 2.26656655 Didymium sp. CCIKV 1215981 Evosea other_Eukaryota 392 9.83e-105   NTclustered gi|399764169|gb|JQ271680.1| 1215981 g14208 i0 99.535 99.0744186046512 215 1 100 0 1 215 243 29 Didymium sp. CCIKV 18S ribosomal RNA gene, partial sequence blastn 21301 392 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Didymiaceae Didymium Didymium sp. CCIKV

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;