RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA393181" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA393181 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
410863 410863 PRJNA393181_S_NODE_44941_length_156_cov_2.621849_g44835_i0 PRJNA393181 44941 156 2.621849 4.09008444 Lacunisphaera limnophila 1838286 Bacteria Bacteria 52.8 0.013   NTclustered gi|1070531674|gb|CP016094.1| 1838286 g44835 i0 100 0.179487179487179 28 0 18 0 109 136 1799270 1799297 Lacunisphaera limnophila strain IG16b, complete genome blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera limnophila
1684901 1684901 PRJNA393181_S_NODE_11642_length_354_cov_2.343849_g11536_i0 PRJNA393181 11642 354 2.343849 8.29722546 Termitidicoccus mucosus 1184151 Bacteria Bacteria 250 1.11e-61   NTclustered gi|2724066732|gb|CP109796.1| 1184151 g11536 i0 79.379 72.1610169491525 354 73 100 0 1 354 2446802 2447155 Termitidicoccus mucosus strain TSB47 chromosome, complete genome blastn 25545 250 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus
1685404 1685404 PRJNA393181_S_NODE_31702_length_197_cov_3.562500_g31596_i0 PRJNA393181 31702 197 3.5625 7.018125 Fontisphaera persica 2974023 Bacteria Bacteria 62.1 2.83e-5   NTclustered gi|2439237958|gb|CP116615.1| 2974023 g31596 i0 97.297 0.187817258883249 37 0 19 1 107 143 4001891 4001856 Fontisphaera persica strain B-154 chromosome, complete genome blastn 37 62.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Limisphaerales Fontisphaeraceae Fontisphaera Fontisphaera persica
9338768 9338768 PRJNA393181_S_NODE_35468_length_183_cov_2.452055_g35362_i0 PRJNA393181 35468 183 2.452055 4.48726065 Opitutus sp. GAS368 1882749 Bacteria Bacteria 121 4.2099999999999996e-23   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g35362 i0 86.364 16.0601092896175 110 15 60 0 74 183 37093 37202 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 2939 121 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;