RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA393181" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA393181 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4906493 4906493 PRJNA393181_S_NODE_31704_length_197_cov_3.412500_g31598_i0 PRJNA393181 31704 197 3.4125 6.722625 Pseudomonadati 3379134 Bacteria Bacteria 134 5.92e-27   NTclustered gi|2449729286|gb|CP114553.1| 2927580 g31598 i0 82.278 9.52791878172589 158 24 79 4 7 162 1877682 1877527 MAG: Candidatus Manganitrophus sp. isolate GAC1 chromosome, complete genome blastn 1877 134 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae Candidatus Manganitrophus Candidatus Manganitrophus sp.
18261645 18261645 PRJNA393181_S_NODE_11875_length_350_cov_3.345048_g11769_i0 PRJNA393181 11875 350 3.345048 11.707668 Candidatus Manganitrophus sp. 2927580 Bacteria Bacteria 366 1.0399999999999996e-96   NTclustered gi|2449738114|gb|CP114561.1| 2927580 g11769 i0 85.838 100.928571428571 346 48 99 1 1 345 2654441 2654786 MAG: Candidatus Manganitrophus sp. isolate GAC4 chromosome, complete genome blastn 35325 366 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae Candidatus Manganitrophus Candidatus Manganitrophus sp.
19536070 19536070 PRJNA393181_S_NODE_18996_length_271_cov_3.376068_g18890_i0 PRJNA393181 18996 271 3.376068 9.14914428 Nitrospira japonica 1325564 Bacteria Bacteria 171 6.58e-38   NTclustered gi|1167499077|emb|LT828648.1| 1325564 g18890 i0 78.148 1.57564575645756 270 57 99 2 1 269 908596 908328 Nitrospira japonica isolate Genome sequencing of Nitrospira japonica strain NJ11 genome assembly, chromosome: I blastn 427 171 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira japonica
19536703 19536703 PRJNA393181_S_NODE_43816_length_159_cov_1.868852_g43710_i0 PRJNA393181 43816 159 1.868852 2.97147468 Candidatus Manganitrophus sp. 2927580 Bacteria Bacteria 52.8 0.013   NTclustered gi|2449733775|gb|CP114555.1| 2927580 g43710 i0 100 0.176100628930818 28 0 18 0 11 38 1224553 1224580 MAG: Candidatus Manganitrophus sp. isolate GAC2 chromosome, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae Candidatus Manganitrophus Candidatus Manganitrophus sp.
24637332 24637332 PRJNA393181_S_NODE_5000_length_512_cov_2.153684_g4895_i0 PRJNA393181 5000 512 2.153684 11.02686208 Candidatus Manganitrophus sp. 2927580 Bacteria Bacteria 407 9.29e-109   NTclustered gi|2449738114|gb|CP114561.1| 2927580 g4895 i0 81.431 94.6484375 517 78 99 18 5 512 1061146 1060639 MAG: Candidatus Manganitrophus sp. isolate GAC4 chromosome, complete genome blastn 48460 407 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Candidatus Troglogloeales Candidatus Manganitrophaceae Candidatus Manganitrophus Candidatus Manganitrophus sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;