RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA393181" and tax_phylum = "Bacteroidota"

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tax_superkingdom 1

tax_phylum 1

  • Bacteroidota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA393181 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1685346 1685346 PRJNA393181_S_NODE_29182_length_209_cov_1.412791_g29076_i0 PRJNA393181 29182 209 1.412791 2.95273319 Hymenobacter monticola 1705399 Bacteria Bacteria 58.4 3.94e-4   NTclustered gi|2216376139|gb|CP094534.1| 1705399 g29076 i0 100 0.425837320574163 31 0 15 0 163 193 4524766 4524796 Hymenobacter monticola strain KACC 22596 chromosome, complete genome blastn 89 58.4 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter monticola
10006580 10006580 PRJNA393181_S_NODE_29948_length_205_cov_2.053571_g29842_i0 PRJNA393181 29948 205 2.053571 4.20982055 Pseudomonadati 3379134 Bacteria Bacteria 54.7 0.005   NTclustered gi|2216376139|gb|CP094534.1| 1705399 g29842 i0 100 1.68292682926829 29 0 14 0 45 73 790932 790960 Hymenobacter monticola strain KACC 22596 chromosome, complete genome blastn 345 54.7 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter monticola
13831811 13831811 PRJNA393181_S_NODE_16151_length_298_cov_2.053640_g16045_i0 PRJNA393181 16151 298 2.05364 6.1198472 Cloacibacterium 501783 Bacteria Bacteria 551 2.239999999999999e-152   NTclustered gi|1527207946|gb|CP034157.1| 237258 g16045 i0 100 498.58389261745 298 0 100 0 1 298 130494 130197 Cloacibacterium normanense strain NRS-1 chromosome, complete genome blastn 148578 551 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Weeksellaceae Cloacibacterium Cloacibacterium normanense
15712819 15712819 PRJNA393181_S_NODE_15593_length_304_cov_2.029963_g15487_i0 PRJNA393181 15593 304 2.029963 6.17108752 Hymenobacter monticola 1705399 Bacteria Bacteria 56.5 0.002   NTclustered gi|2216376139|gb|CP094534.1| 1705399 g15487 i0 94.444 0.674342105263158 36 2 12 0 131 166 2899871 2899906 Hymenobacter monticola strain KACC 22596 chromosome, complete genome blastn 205 56.5 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter monticola
15713573 15713573 PRJNA393181_S_NODE_44993_length_156_cov_2.268908_g44887_i0 PRJNA393181 44993 156 2.268908 3.53949648 Hymenobacter sp. PAMC 26628 1484118 Bacteria Bacteria 244 1.9799999999999998e-60   NTclustered gi|996006667|gb|CP014304.1| 1484118 g44887 i0 94.872 282.596153846154 156 8 100 0 1 156 586473 586628 Hymenobacter sp. PAMC 26628 chromosome, complete genome blastn 44085 244 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sp. PAMC 26628
18262241 18262241 PRJNA393181_S_NODE_34375_length_187_cov_2.033333_g34269_i0 PRJNA393181 34375 187 2.033333 3.80233271 Hymenobacter sp. BRD128 2675878 Bacteria Bacteria 346 6.56e-91   NTclustered gi|1847993467|gb|CP053908.1| 2675878 g34269 i0 100 248.625668449198 187 0 100 0 1 187 339013 338827 Hymenobacter sp. BRD128 chromosome, complete genome blastn 46493 346 1 Bacteria FCB group Pseudomonadati Bacteroidota Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sp. BRD128

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;