RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA393181" and tax_kingdom = "Bamfordvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Bamfordvirae · 4 ✖

bioproject 1

  • PRJNA393181 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1685183 1685183 PRJNA393181_S_NODE_22942_length_242_cov_3.048780_g22836_i0 PRJNA393181 22942 242 3.04878 7.3780476 Parapoxvirus orf 3431389 Viruses Viruses 69.4 2.16e-7   NTclustered gi|2755084441|gb|PP943425.1| 10258 g22836 i0 90.741 17.3181818181818 54 2 21 3 1 52 67793 67845 Orf virus isolate FX10, partial genome blastn 4191 69.4 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Parapoxvirus Parapoxvirus orf
2353938 2353938 PRJNA393181_S_NODE_33962_length_188_cov_112.443709_g33856_i0 PRJNA393181 33962 188 112.443709 211.39417292 Viruses 10239 Viruses Viruses 75 3.44e-9   NTclustered gi|2755084441|gb|PP943425.1| 10258 g33856 i0 94 23.6276595744681 50 2 27 1 9 58 67792 67840 Orf virus isolate FX10, partial genome blastn 4442 75 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Parapoxvirus Parapoxvirus orf
5514323 5514323 PRJNA393181_S_NODE_32945_length_193_cov_1.256410_g32839_i0 PRJNA393181 32945 193 1.25641 2.4248713 Parapoxvirus orf 3431389 Viruses Viruses 69.4 1.65e-7   NTclustered gi|2755084565|gb|PP943426.1| 10258 g32839 i0 100 21.5958549222798 37 0 19 0 1 37 121050 121086 Orf virus isolate FX17, partial genome blastn 4168 69.4 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Parapoxvirus Parapoxvirus orf
8731039 8731039 PRJNA393181_S_NODE_15347_length_306_cov_64.037175_g15241_i0 PRJNA393181 15347 306 64.037175 195.9537555 Viruses 10239 Viruses Viruses 75 6.09e-9   NTclustered gi|2755084441|gb|PP943425.1| 10258 g15241 i0 95.652 14.4346405228758 46 2 15 0 253 298 67837 67792 Orf virus isolate FX10, partial genome blastn 4417 75 1 Viruses   Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae Parapoxvirus Parapoxvirus orf

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;