RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA393181" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA393181 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11889558 11889558 PRJNA393181_S_NODE_39150_length_171_cov_4.022388_g39044_i0 PRJNA393181 39150 171 4.022388 6.87828348 Gregarina niphandrodes 110365 SAR_Eukaryotes SAR_Eukaryotes 67.6 5.11e-7   NTclustered gi|749156808|ref|XM_011131731.1| 110365 g39044 i0 97.436 0.947368421052632 39 1 23 0 64 102 472 510 Gregarina niphandrodes hypothetical protein partial mRNA blastn 162 67.6 1 Eukaryota Sar   Apicomplexa Conoidasida Eugregarinorida Gregarinidae Gregarina Gregarina niphandrodes
25304798 25304798 PRJNA393181_S_NODE_44100_length_158_cov_2.520661_g43994_i0 PRJNA393181 44100 158 2.520661 3.98264438 root 1 Root_unresolved Root_unresolved 292 7.07e-75   NTclustered gi|2845540150|gb|PQ478072.1| 4796 g43994 i0 100 99.253164556962 158 0 100 0 1 158 401 558 Phytophthora palmivora clone BAX_control_positivo_de_HR_donado BAX protein (BAX) gene, complete cds blastn 15682 292 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;