contig_metadata
9 rows where analysis = "blastn", bioproject = "PRJNA390533" and tax_phylum = "Verrucomicrobiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1078182 | 1078182 | PRJNA390533_P_NODE_43121_length_168_cov_3.434109_g42094_i0 | PRJNA390533 | 43121 | 168 | 3.434109 | 5.76930312 | Akkermansia | 239934 | Bacteria | Bacteria | 176 | 8.03e-40 | NTclustered | gi|2756360508|gb|CP156688.1| | 239935 | g42094 | i0 | 86.792 | 87.2976190476191 | 159 | 20 | 94 | 1 | 1 | 158 | 360605 | 360763 | Akkermansia muciniphila strain AKK-TMU chromosome, complete genome | blastn | 14666 | 176 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Akkermansiaceae | Akkermansia | Akkermansia muciniphila | |
| 1684630 | 1684630 | PRJNA390533_P_NODE_33562_length_218_cov_2.955307_g32535_i0 | PRJNA390533 | 33562 | 218 | 2.955307 | 6.44256926 | Opitutus sp. GAS368 | 1882749 | Bacteria | Bacteria | 333 | 6.149999999999999e-87 | NTclustered | gi|1085764882|emb|LT629735.1| | 1882749 | g32535 | i0 | 95.673 | 3.8302752293578 | 208 | 8 | 95 | 1 | 3 | 209 | 2833869 | 2833662 | Opitutus sp. GAS368 genome assembly, chromosome: I | blastn | 835 | 333 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. GAS368 | |
| 6787213 | 6787213 | PRJNA390533_P_NODE_1286_length_1418_cov_19.247281_g1060_i0 | PRJNA390533 | 1286 | 1418 | 19.247281 | 272.92644458 | Verrucomicrobia bacterium IMCC26134 | 1637999 | Bacteria | Bacteria | 1858 | 0 | NTclustered | gi|807238858|gb|CP011265.1| | 1637999 | g1060 | i0 | 93.546 | 100.625528913963 | 1255 | 69 | 88 | 10 | 21 | 1270 | 1904241 | 1902994 | Verrucomicrobia bacterium IMCC26134, complete genome | blastn | 142687 | 1858 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobia bacterium IMCC26134 | |||||
| 8062941 | 8062941 | PRJNA390533_P_NODE_2327_length_1163_cov_5.368327_g1965_i0 | PRJNA390533 | 2327 | 1163 | 5.368327 | 62.43364301 | Pedosphaera parvula | 1032527 | Bacteria | Bacteria | 1068 | 0 | NTclustered | gi|183579829|emb|AM905426.1| | 320771 | g1965 | i0 | 86.053 | 172.313843508169 | 1011 | 121 | 86 | 17 | 27 | 1026 | 588 | 1589 | Bacterium Ellin514 23S rRNA gene, isolate Ellin514 | blastn | 200401 | 1068 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Pedosphaerae | Pedosphaerales | Pedosphaeraceae | Pedosphaera | Pedosphaera parvula | |
| 13163648 | 13163648 | PRJNA390533_P_NODE_50511_length_150_cov_1.810811_g49484_i0 | PRJNA390533 | 50511 | 150 | 1.810811 | 2.7162165 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 121 | 3.3e-23 | NTclustered | gi|2874254065|emb|OY970130.1| | 412056 | g49484 | i0 | 81.208 | 3.84 | 149 | 28 | 99 | 0 | 2 | 150 | 4834727 | 4834579 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD05705.bin.c.1 genome assembly, chromosome: 1 | blastn | 576 | 121 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 15712257 | 15712257 | PRJNA390533_P_NODE_18613_length_408_cov_1.878049_g17594_i0 | PRJNA390533 | 18613 | 408 | 1.878049 | 7.66243992 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 220 | 1.01e-52 | NTclustered | gi|2874253952|emb|OY970277.1| | 412056 | g17594 | i0 | 93.289 | 17.4852941176471 | 149 | 10 | 79 | 0 | 1 | 149 | 2750188 | 2750040 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04580.bin.1.45 genome assembly, chromosome: 1 | blastn | 7134 | 220 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 18929557 | 18929557 | PRJNA390533_P_NODE_14675_length_488_cov_3.293987_g13685_i0 | PRJNA390533 | 14675 | 488 | 3.293987 | 16.07465656 | Verrucomicrobiaceae | 203557 | Bacteria | Bacteria | 248 | 5.6599999999999994e-61 | NTclustered | gi|1953472588|gb|CP066776.1| | 2707525 | g13685 | i0 | 82.333 | 16.9262295081967 | 300 | 40 | 61 | 9 | 32 | 329 | 632291 | 632579 | Sulfuriroseicoccus oceanibius strain T37 chromosome, complete genome | blastn | 8260 | 250 | 0.992 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Sulfuriroseicoccus | Sulfuriroseicoccus oceanibius | |
| 23361649 | 23361649 | PRJNA390533_P_NODE_1519_length_1341_cov_19.612903_g1060_i1 | PRJNA390533 | 1519 | 1341 | 19.612903 | 263.00902923 | Verrucomicrobia bacterium IMCC26134 | 1637999 | Bacteria | Bacteria | 1681 | 0 | NTclustered | gi|807238858|gb|CP011265.1| | 1637999 | g1060 | i1 | 92.186 | 94.6368381804623 | 1203 | 73 | 89 | 18 | 1 | 1193 | 1904185 | 1902994 | Verrucomicrobia bacterium IMCC26134, complete genome | blastn | 126908 | 1681 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobia bacterium IMCC26134 | |||||
| 24636131 | 24636131 | PRJNA390533_P_NODE_3100_length_1045_cov_5.204771_g1965_i1 | PRJNA390533 | 3100 | 1045 | 5.204771 | 54.38985695 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 1284 | 0 | NTclustered | gi|2874253690|emb|OY969416.1| | 412056 | g1965 | i1 | 91.186 | 168.203827751196 | 953 | 73 | 91 | 11 | 27 | 973 | 1315514 | 1316461 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 | blastn | 175773 | 1284 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;