RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA390533" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA390533 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11888615 11888615 PRJNA390533_P_NODE_41150_length_176_cov_1.145985_g40123_i0 PRJNA390533 41150 176 1.145985 2.0169336 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 115 1.87e-21   NTclustered gi|2874253728|emb|OY969570.1| 412054 g40123 i0 84.956 60.4261363636364 113 17 64 0 1 113 1124210 1124098 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 10635 115 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18261230 18261230 PRJNA390533_P_NODE_23595_length_331_cov_12.839041_g22571_i0 PRJNA390533 23595 331 12.839041 42.49722571 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 230 1.3399999999999998e-55   NTclustered gi|2874253978|emb|OY970303.1| 412054 g22571 i0 85.398 257.716012084592 226 27 68 6 1 223 1902890 1903112 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 85304 230 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
18261463 18261463 PRJNA390533_P_NODE_43915_length_166_cov_1.582677_g42888_i0 PRJNA390533 43915 166 1.582677 2.62724382 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 182 1.7e-41   NTclustered gi|575456455|gb|CP007128.1| 861299 g42888 i0 86.957 28.1686746987952 161 21 97 0 4 164 1607593 1607753 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 4676 182 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
20811479 20811479 PRJNA390533_P_NODE_42677_length_170_cov_1.534351_g41650_i0 PRJNA390533 42677 170 1.534351 2.6083967 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 128 2.3e-25   NTclustered gi|2108172456|gb|CP070716.1| 2026742 g41650 i0 82.432 22.4941176470588 148 24 86 2 21 167 1939481 1939627 MAG: Gemmatimonadetes bacterium isolate bin486 chromosome blastn 3824 128 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;