RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA390533" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA390533 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3628916 3628916 PRJNA390533_P_NODE_31443_length_237_cov_2.525253_g30416_i0 PRJNA390533 31443 237 2.525253 5.98484961 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 407 3.94e-109   NTclustered gi|1837628855|gb|MN158348.1| 5909 g30416 i0 97.5 93.8649789029536 240 3 100 1 1 237 2737 2976 Tetrahymena rostrata strain TRAUS 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 22246 407 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena rostrata
16987088 16987088 PRJNA390533_P_NODE_22494_length_347_cov_3.516234_g21470_i0 PRJNA390533 22494 347 3.516234 12.20133198 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 497 3.51e-136   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g21470 i0 95.779 34.6397694524496 308 13 89 0 40 347 19 326 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 12020 497 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;