RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA390533" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA390533 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13163283 13163283 PRJNA390533_P_NODE_16191_length_454_cov_3.407229_g15184_i0 PRJNA390533 16191 454 3.407229 15.46881966 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 364 4.979999999999998e-96   NTclustered gi|470529412|ref|XM_004368013.1| 1257118 g15184 i0 85.714 3.38986784140969 350 45 76 3 18 363 398 746 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_290930), partial mRNA blastn 1539 364 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24636206 24636206 PRJNA390533_P_NODE_39420_length_183_cov_1.708333_g38393_i0 PRJNA390533 39420 183 1.708333 3.12624939 Vexillifera multispinosa 1105342 Discosea other_Eukaryota 198 1.8899999999999998e-46   NTclustered gi|354720322|gb|HQ687481.1| 1105342 g38393 i0 87.432 62.5081967213115 183 9 100 8 1 183 56 224 Vexillifera multispinosa strain P124 small subunit ribosomal RNA gene, partial sequence blastn 11439 198 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera multispinosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;