RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA385396" and tax_phylum = "Mucoromycota"

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tax_superkingdom 1

tax_phylum 1

  • Mucoromycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA385396 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11885508 11885508 PRJNA385396_P_NODE_13630_length_251_cov_0.865169_g13538_i0 PRJNA385396 13630 251 0.865169 2.17157419 Lichtheimia ornata 688661 Fungi Fungi 143 1.31e-29   NTclustered gi|2553553343|ref|XM_058481344.1| 688661 g13538 i0 85.507 4.83665338645418 138 18 55 2 6 142 216 352 Lichtheimia ornata ribosomal protein S8.e (O0I10_001247), partial mRNA blastn 1214 143 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Lichtheimiaceae Lichtheimia Lichtheimia ornata
18928067 18928067 PRJNA385396_P_NODE_4555_length_376_cov_1.019802_g4463_i0 PRJNA385396 4555 376 1.019802 3.83445552 Mucorales 4827 Fungi Fungi 313 1.49e-80   NTclustered gi|1818754124|gb|MN159909.1| 4846 g4463 i0 82.692 96.3829787234042 364 51 95 8 15 372 488 131 Rhizopus stolonifer voucher SICAUCC 19-0001 translation elongation factor 1-alpha (tef1) gene, partial cds blastn 36240 315 0.993650793650794 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus stolonifer
25302723 25302723 PRJNA385396_P_NODE_15680_length_248_cov_0.880000_g15588_i0 PRJNA385396 15680 248 0.88 2.1824 Rhizopus 4842 Fungi Fungi 237 5.77e-58   NTclustered gi|262317977|dbj|AB512261.1| 4847 g15588 i0 84.211 99.3548387096774 247 35 99 4 4 248 1045 801 Rhizopus microsporus var. oligosporus EF-1alpha gene for translation elongation factor 1-alpha, partial cds, strain: CBS 338.62 blastn 24640 237 1 Eukaryota Opisthokonta Fungi Mucoromycota Mucoromycetes Mucorales Rhizopodaceae Rhizopus Rhizopus microsporus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;