RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA385396" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA385396 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2957700 2957700 PRJNA385396_P_NODE_2703_length_460_cov_2.509044_g2611_i0 PRJNA385396 2703 460 2.509044 11.5416024 Monoraphidium neglectum 145388 Plants Plants 268 4.0699999999999994e-67   NTclustered gi|926782661|ref|XM_014044351.1| 145388 g2611 i0 82.222 21.3891304347826 315 52 68 4 1 313 430 118 Monoraphidium neglectum 40S ribosomal protein S15 mRNA blastn 9839 268 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
5510833 5510833 PRJNA385396_P_NODE_4945_length_365_cov_1.986301_g4853_i0 PRJNA385396 4945 365 1.986301 7.24999865 Mantoniella tinhauana 3097027 Plants Plants 243 1.92e-59   NTclustered gi|2735153281|gb|CP140066.1| 3097027 g4853 i0 79.769 15.9479452054795 346 60 93 9 2 342 186963 186623 Mantoniella tinhauana isolate LFS chromosome 5 blastn 5821 243 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Mantoniella Mantoniella tinhauana
8059952 8059952 PRJNA385396_P_NODE_10407_length_280_cov_1.487923_g10315_i0 PRJNA385396 10407 280 1.487923 4.1661844 Chlorella variabilis 554065 Plants Plants 250 8.52e-62   NTclustered gi|552837863|ref|XM_005849397.1| 554065 g10315 i0 83.333 4.85 276 40 98 5 7 279 356 628 Chlorella variabilis hypothetical protein (CHLNCDRAFT_30273) mRNA, complete cds blastn 1358 250 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
14435600 14435600 PRJNA385396_P_NODE_14432_length_250_cov_0.870056_g14340_i0 PRJNA385396 14432 250 0.870056 2.17514 Chlorella variabilis 554065 Plants Plants 255 1.61e-63   NTclustered gi|552842243|ref|XM_005850451.1| 554065 g14340 i0 85.6 10.188 250 28 98 7 5 250 598 353 Chlorella variabilis GTP-binding protein YPTC4 (CHLNCDRAFT_29716) mRNA, complete cds blastn 2547 255 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
16984425 16984425 PRJNA385396_P_NODE_2894_length_447_cov_1.497326_g2802_i0 PRJNA385396 2894 447 1.497326 6.69304722 Monoraphidium neglectum 145388 Plants Plants 348 4.93e-91   NTclustered gi|926780633|ref|XM_014043337.1| 145388 g2802 i0 83.117 15.5190156599553 385 61 86 4 65 447 64 446 Monoraphidium neglectum 40S ribosomal protein S14-3 mRNA blastn 6937 348 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
18928037 18928037 PRJNA385396_P_NODE_1255_length_639_cov_3.245583_g1164_i0 PRJNA385396 1255 639 3.245583 20.73927537 Coccomyxa 41891 Plants Plants 93.5 3.74e-14   NTclustered gi|1360638129|gb|AC277064.1| 574566 g1164 i0 83.654 16.5649452269171 104 12 16 4 538 639 1142 1042 Coccomyxa subellipsoidea C-169 clone FAHX137-B20, complete sequence blastn 10585 93.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;