RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA385396" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA385396 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11279744 11279744 PRJNA385396_P_NODE_19569_length_243_cov_0.905882_g19477_i0 PRJNA385396 19569 243 0.905882 2.20129326 Thermus 270 Bacteria Bacteria 449 6.65e-122   NTclustered gi|982539283|gb|CP014141.1| 456163 g19477 i0 100 3 243 0 100 0 1 243 41088 40846 Thermus parvatiensis strain RL, complete genome blastn 729 449 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus parvatiensis
14436038 14436038 PRJNA385396_P_NODE_9472_length_290_cov_1.626728_g9380_i0 PRJNA385396 9472 290 1.626728 4.7175112 Trueperaceae bacterium 2026798 Bacteria Bacteria 407 4.969999999999999e-109   NTclustered gi|2621701816|emb|OY759346.1| 2026798 g9380 i0 94.361 315.534482758621 266 14 92 1 25 290 3600897 3601161 MAG: Trueperaceae bacterium isolate dd143a13-9bf8-4812-ba0e-a3cf349d91ff genome assembly, chromosome: 1 blastn 91505 407 1 Bacteria   Thermotogati Deinococcota Deinococci Trueperales Trueperaceae   Trueperaceae bacterium
16379016 16379016 PRJNA385396_P_NODE_12693_length_256_cov_2.087432_g12601_i0 PRJNA385396 12693 256 2.087432 5.34382592 Deinococcus 1298 Bacteria Bacteria 388 1.5599999999999998e-103   NTclustered gi|1220362168|gb|CP021081.1| 317577 g12601 i0 95.122 211.66015625 246 12 96 0 11 256 2340403 2340158 Deinococcus ficus strain CC-FR2-10, complete genome blastn 54185 388 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus ficus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;