RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA385073" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA385073 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3626916 3626916 PRJNA385073_P_NODE_33063_length_270_cov_3.319797_g32901_i0 PRJNA385073 33063 270 3.319797 8.9634519 Metazoa 33208 Platyhelminthes Platyhelminthes 499 7.349999999999998e-137   NTclustered gi|60687563|gb|AY914894.1| 6182 g32901 i0 100 100 270 0 100 0 1 270 128 397 Schistosoma japonicum unknown mRNA blastn 27000 499 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
4233226 4233226 PRJNA385073_P_NODE_42624_length_250_cov_2.610169_g42462_i0 PRJNA385073 42624 250 2.610169 6.5254225 Stenostomum leucops 52061 Platyhelminthes Platyhelminthes 444 3.1999999999999986e-120   NTclustered gi|28273263|gb|AY157151.1| 52061 g42462 i0 98.795 38.512 249 3 99 0 1 249 2219 2467 Stenostomum leucops 28S large subunit ribosomal RNA gene, partial sequence blastn 9628 444 1 Eukaryota Opisthokonta Metazoa Platyhelminthes     Stenostomidae Stenostomum Stenostomum leucops
13159624 13159624 PRJNA385073_P_NODE_33111_length_270_cov_2.345178_g32949_i0 PRJNA385073 33111 270 2.345178 6.3319806 Gyratrix hermaphroditus 84080 Platyhelminthes Platyhelminthes 366 7.78e-97   NTclustered gi|588313922|gb|KC869880.1| 84080 g32949 i0 91.176 93.637037037037 272 21 100 2 1 270 2093 1823 Gyratrix hermaphroditus 28S ribosomal RNA gene, partial sequence blastn 25282 366 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Rhabdocoela Polycystididae Gyratrix Gyratrix hermaphroditus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;