RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA385073" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA385073 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1076434 1076434 PRJNA385073_P_NODE_60761_length_235_cov_2.487654_g60599_i0 PRJNA385073 60761 235 2.487654 5.8459869 Mesomycoplasma 2923352 Bacteria Bacteria 435 1.79e-117   NTclustered gi|2713084492|gb|CP150431.1| 2100 g60599 i0 100 379.863829787234 235 0 100 0 1 235 223949 223715 Mesomycoplasma hyorhinis strain Nahrain chromosome blastn 89268 435 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
1680436 1680436 PRJNA385073_P_NODE_19602_length_321_cov_1.411290_g19440_i0 PRJNA385073 19602 321 1.41129 4.5302409 Mycoplasmatota bacterium 2231116 Bacteria Bacteria 119 2.93e-22   NTclustered gi|2047333279|gb|CP076020.1| 2231116 g19440 i0 77.828 19.1682242990654 221 29 66 17 95 305 733623 733413 Tenericutes bacterium strain zrk2 chromosome, complete genome blastn 6153 119 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium
11279433 11279433 PRJNA385073_P_NODE_36929_length_261_cov_1.404255_g36767_i0 PRJNA385073 36929 261 1.404255 3.66510555 root 1 Root_unresolved Root_unresolved 52.8 0.024   NTclustered gi|2678327680|gb|CP145106.1| 2097 g36767 i0 100 0.96551724137931 28 0 11 0 42 69 511263 511290 Mycoplasmoides genitalium strain 73697 chromosome blastn 252 52.8 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Mycoplasmoides Mycoplasmoides genitalium
18257129 18257129 PRJNA385073_P_NODE_19915_length_319_cov_1.703252_g19753_i0 PRJNA385073 19915 319 1.703252 5.43337388 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 244 4.6e-60   NTclustered gi|2621784632|emb|OY781090.1| 1898209 g19753 i0 80.864 8.89028213166144 324 50 100 12 1 319 839085 839401 MAG: Acholeplasmataceae bacterium isolate ac846720-52a4-4ed8-8e7a-77cd78ec885f genome assembly, chromosome: 1 blastn 2836 244 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;