contig_metadata
8 rows where analysis = "blastn", bioproject = "PRJNA385073" and tax_phylum = "Gemmatimonadota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1681419 | 1681419 | PRJNA385073_P_NODE_64742_length_204_cov_6.236641_g64580_i0 | PRJNA385073 | 64742 | 204 | 6.236641 | 12.72274764 | Gemmatirosa kalamazoonensis | 861299 | Bacteria | Bacteria | 200 | 6.01e-47 | NTclustered | gi|575462059|gb|CP007130.1| | 861299 | g64580 | i0 | 84.541 | 3 | 207 | 26 | 100 | 3 | 1 | 204 | 146380 | 146177 | Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence | blastn | 612 | 200 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa kalamazoonensis | |
| 4233101 | 4233101 | PRJNA385073_P_NODE_36204_length_262_cov_3.518519_g36042_i0 | PRJNA385073 | 36204 | 262 | 3.518519 | 9.21851978 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 364 | 2.7e-96 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g36042 | i0 | 92.607 | 298.786259541985 | 257 | 13 | 97 | 6 | 9 | 262 | 1904040 | 1904293 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 78282 | 364 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 4904149 | 4904149 | PRJNA385073_P_NODE_30564_length_277_cov_2.068627_g30402_i0 | PRJNA385073 | 30564 | 277 | 2.068627 | 5.73009679 | Gemmatimonadota | 142182 | Bacteria | Bacteria | 375 | 1.3299999999999998e-99 | NTclustered | gi|2874254163|emb|OY970395.1| | 412054 | g30402 | i0 | 91.039 | 109.967509025271 | 279 | 23 | 100 | 2 | 1 | 277 | 1605910 | 1606188 | MAG: uncultured Gemmatimonadales bacterium isolate MFD05684.bin.c.1 genome assembly, chromosome: 1 | blastn | 30461 | 375 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 8059050 | 8059050 | PRJNA385073_P_NODE_28227_length_284_cov_1.303318_g28065_i0 | PRJNA385073 | 28227 | 284 | 1.303318 | 3.70142312 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 222 | 1.89e-53 | NTclustered | gi|2874253789|emb|OY969773.1| | 412054 | g28065 | i0 | 81.716 | 3.65492957746479 | 268 | 47 | 94 | 2 | 18 | 284 | 1658433 | 1658167 | MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 | blastn | 1038 | 222 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 11884753 | 11884753 | PRJNA385073_P_NODE_39490_length_255_cov_1.313187_g39328_i0 | PRJNA385073 | 39490 | 255 | 1.313187 | 3.34862685 | Gemmatimonas phototrophica | 1379270 | Bacteria | Bacteria | 252 | 2.13e-62 | NTclustered | gi|1015602748|gb|CP011454.1| | 1379270 | g39328 | i0 | 84.706 | 53.4078431372549 | 255 | 35 | 99 | 4 | 1 | 253 | 2840644 | 2840392 | Gemmatimonas phototrophica strain AP64, complete genome | blastn | 13619 | 252 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | Gemmatimonas phototrophica | |
| 13160358 | 13160358 | PRJNA385073_P_NODE_65371_length_198_cov_7.376000_g65209_i0 | PRJNA385073 | 65371 | 198 | 7.376 | 14.60448 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 305 | 1.19e-78 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g65209 | i0 | 94.872 | 122.545454545455 | 195 | 10 | 100 | 0 | 4 | 198 | 172854 | 172660 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 24264 | 305 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 18258059 | 18258059 | PRJNA385073_P_NODE_63275_length_221_cov_6.486486_g63113_i0 | PRJNA385073 | 63275 | 221 | 6.486486 | 14.33513406 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 350 | 6.2e-92 | NTclustered | gi|2874253728|emb|OY969570.1| | 412054 | g63113 | i0 | 95.434 | 113.58371040724 | 219 | 10 | 99 | 0 | 3 | 221 | 172390 | 172172 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 | blastn | 25102 | 350 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 20202576 | 20202576 | PRJNA385073_P_NODE_59716_length_240_cov_2.263473_g59554_i0 | PRJNA385073 | 59716 | 240 | 2.263473 | 5.4323352 | Bacteria | 2 | Bacteria | Bacteria | 69.4 | 2.14e-7 | NTclustered | gi|2893356056|emb|OZ220479.1| | 2910168 | g59554 | i0 | 86.885 | 6.1 | 61 | 8 | 25 | 0 | 146 | 206 | 649458 | 649398 | MAG: Longimicrobiales bacterium isolate ffc3e9c5-5d9e-49e8-9e51-7ae5a16491fe genome assembly, chromosome: 1 | blastn | 1464 | 69.4 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Longimicrobiia | Longimicrobiales | Longimicrobiales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;